RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TIMM44O43615 452 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 SNX3O60493 162 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 DNAJC6O75061 913 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 CES1P23141 567 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 RARS2Q5T160 578 aaKnown RBP18.49■□□□□ 0.55
USP39-201ENST00000323701 CILP2Q8IUL8 1156 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 NPAS3Q8IXF0 933 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 EID2BQ96D98 161 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 ZFYVE19Q96K21 471 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 NDNQ99608 321 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 DPP7Q9UHL4 492 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 GGA2Q9UJY4 613 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 SOBPA7XYQ1 873 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 SLC7A4O43246 635 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 GOT2P00505 430 aaKnown RBP18.49■□□□□ 0.55
USP39-201ENST00000323701 WEE1P30291 646 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 CORO7P57737 925 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 MESP2Q0VG99 397 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 FAM78AQ5JUQ0 283 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 CLEC14AQ86T13 490 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 ADIPOR2Q86V24 386 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 EFHBQ8N7U6 833 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 OR4K2Q8NGD2 314 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 SORCS1Q8WY21 1168 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 PITPNM3Q9BZ71 974 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 MFSD1Q9H3U5 465 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 MANSC1Q9H8J5 431 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 ZNF395Q9H8N7 513 aaPredicted RBP18.49■□□□□ 0.55
USP39-201ENST00000323701 SLC28A3Q9HAS3 691 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 PHTF1Q9UMS5 762 aa18.49■□□□□ 0.55
USP39-201ENST00000323701 EBAG9O00559 213 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 TRAFD1O14545 582 aaPredicted RBP18.48■□□□□ 0.55
USP39-201ENST00000323701 ALPIP09923 528 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 CTPS1P17812 591 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 PRAMEP78395 509 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 C6orf89Q6UWU4 347 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 GLT6D1Q7Z4J2 308 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 FGF13Q92913 245 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 FAM167BQ9BTA0 163 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 NSMCE4AQ9NXX6 385 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 FAM95CA0A1B0GW59 222 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 OTOL1A6NHN0 477 aaPredicted RBP18.48■□□□□ 0.55
USP39-201ENST00000323701 PLIN3O60664 434 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 EDF1O60869 148 aaKnown RBP18.48■□□□□ 0.55
USP39-201ENST00000323701 PAPLNO95428 1278 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 S1PR4O95977 384 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 SLC35E2BP0CK96 405 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 PABPC1P11940 636 aaKnown RBP18.48■□□□□ 0.55
USP39-201ENST00000323701 USP10Q14694 798 aaKnown RBP18.48■□□□□ 0.55
USP39-201ENST00000323701 NLRP9Q7RTR0 991 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 OTOAQ7RTW8 1153 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 ZSWIM9Q86XI8 627 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 CACNA2D3Q8IZS8 1091 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 TNS4Q8IZW8 715 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 PIH1D2Q8WWB5 315 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 CDKN2AIPNLQ96HQ2 116 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 BPIFA1Q9NP55 256 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 TBC1D14Q9P2M4 693 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 MSRAQ9UJ68 235 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 HS3ST2Q9Y278 367 aa18.48■□□□□ 0.55
USP39-201ENST00000323701 BNIP3LO60238 219 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 TCF3P15923 654 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 LEPRP48357 1165 aaKnown RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 CD151P48509 253 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 TAS2R39P59534 338 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 GEN1Q17RS7 908 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 ARMC3Q5W041 872 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 C12orf40Q86WS4 652 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 SPATA6LQ8N4H0 392 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 OTUD6BQ8N6M0 293 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 CELF5Q8N6W0 485 aaKnown RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 GPATCH11Q8N954 259 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 OLFM1Q99784 485 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 OMDQ99983 421 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 C1QTNF1Q9BXJ1 281 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 RASSF4Q9H2L5 321 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 SFXN1Q9H9B4 322 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 GLRA3O75311 464 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 RPP40O75818 363 aaKnown RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 PGLSO95336 258 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 PROCP04070 461 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 CYP17A1P05093 508 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 CDKN1CP49918 316 aaPredicted RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 DHCR24Q15392 516 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 TAF1AQ15573 450 aaPredicted RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 ZCCHC23Q6ZST2 131 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 CCDC63Q8NA47 563 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 STYXQ8WUJ0 223 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 ADGRE3Q9BY15 652 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 UNKQ9C0B0 810 aaKnown RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 C20orf27Q9GZN8 174 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 NLE1Q9NVX2 485 aaPredicted RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 POLR3BQ9NW08 1133 aaPredicted RBP18.47■□□□□ 0.55
USP39-201ENST00000323701 SIRPGQ9P1W8 387 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 DCDC2Q9UHG0 476 aa18.47■□□□□ 0.55
USP39-201ENST00000323701 NUP210Q8TEM1 1887 aaPredicted RBP18.46■□□□□ 0.55
USP39-201ENST00000323701 GPR39O43194 453 aa18.46■□□□□ 0.55
USP39-201ENST00000323701 BPGMP07738 259 aa18.46■□□□□ 0.55
USP39-201ENST00000323701 ARSAP15289 507 aa18.46■□□□□ 0.55
USP39-201ENST00000323701 KCNA4P22459 653 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms