RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LIMK2P53671 638 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 MRPS5P82675 430 aaKnown RBP12.9□□□□□ -0.35
COL3A1-201ENST00000304636 PYDC2Q56P42 97 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 IL31RAQ8NI17 732 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 CD101Q93033 1021 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 ITCHQ96J02 903 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 CSPG4P5Q96PW8 444 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 CPXM1Q96SM3 734 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 SLC7A5P2Q9GIP4 190 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 SAGE2PA6NJ88 616 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 TBX10O75333 385 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 POMCP01189 267 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 RPL26P61254 145 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 EN1Q05925 392 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ELAVL2Q12926 359 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 SLC25A52Q3SY17 297 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 TIGD2Q4W5G0 525 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 PAGE2BQ5JRK9 111 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 CERCAMQ5T4B2 595 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 REP15Q6BDI9 236 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ADAMTSL2Q86TH1 951 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 RBM4BQ9BQ04 359 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 RBM4Q9BWF3 364 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 RPRD1BQ9NQG5 326 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 COL5A2P05997 1499 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 HOXA2O43364 376 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 GCATO75600 419 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 CKMP06732 381 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 GTF2A2P52657 109 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ARL13AQ5H913 290 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 PPM1JQ5JR12 505 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 PPP1R26Q5T8A7 1209 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 CBR4Q8N4T8 237 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 LRTOMTQ8WZ04 291 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 YIPF2Q9BWQ6 316 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 TMEM165Q9HC07 324 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ZFP14Q9HCL3 533 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ING4Q9UNL4 249 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 LGR5O75473 907 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 NOS3P29474 1203 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 STAT5AP42229 794 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 BCL2L1Q07817 233 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 SHROOM1Q2M3G4 852 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 LSM12Q3MHD2 195 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 GLYATQ6IB77 296 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 SCIMPQ6UWF3 145 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 SLC26A9Q7LBE3 791 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 GPR180Q86V85 440 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF614Q8N883 585 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 UXS1Q8NBZ7 420 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 CAPN10Q9HC96 672 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ADGRE2Q9UHX3 823 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 NFAT5O94916 1531 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 IFRD1O00458 451 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 HAT1O14929 419 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 NPM3O75607 178 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 LRIG2O94898 1065 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 HOXA10P31260 410 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 IRF8Q02556 426 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 PRKCQQ04759 706 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ENPEPQ07075 957 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 NPY5RQ15761 445 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 PTPRNQ16849 979 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 CELF3Q5SZQ8 465 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 WSCD1Q658N2 575 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ROPN1LQ96C74 230 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 TDRD1Q9BXT4 1180 aaKnown RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 KANSL3Q9P2N6 904 aa12.89□□□□□ -0.35
COL3A1-201ENST00000304636 ARIH1Q9Y4X5 557 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-201ENST00000304636 YDJCA8MPS7 323 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 KPNA6O60684 536 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 MTHFRP42898 656 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 RFX3P48380 749 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CDH13P55290 713 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 PRKD1Q15139 912 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ANO7Q6IWH7 933 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 LCLAT1Q6UWP7 414 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 OOSP2Q86WS3 158 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 C12orf29Q8N999 325 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 RAET1EQ8TD07 263 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 DMAC2Q9NW81 257 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 PLK2Q9NYY3 685 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 DKK3Q9UBP4 350 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SAMD4AQ9UPU9 718 aaKnown RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ZBTB11O95625 1053 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 IGSF6O95976 241 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 THRBP10828 461 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CLK2P49760 499 aaKnown RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 PTCD2Q8WV60 388 aaKnown RBP12.88□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF570Q96NI8 536 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SLITRK2Q9H156 845 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 GIN1Q9NXP7 522 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 SPATA31C2B4DYI2 1134 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 LOC110117498-PIK3R3F6TDL0 507 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 FFAR3O14843 346 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 GPR42O15529 346 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 H6PDO95479 791 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 LGALS2P05162 132 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CCNYL2Q5T2Q4 361 aa12.88□□□□□ -0.35
COL3A1-201ENST00000304636 CHMP1BQ7LBR1 199 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms