RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM46DQ8NEK8 389 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 C11orf70Q9BRQ4 267 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 RAB6CQ9H0N0 254 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 ATP13A3Q9H7F0 1226 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 LRIT1Q9P2V4 623 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 LHX3Q9UBR4 397 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 PCDHGA4Q9Y5G9 962 aa14.87□□□□□ -0.03
CCDC88B-201ENST00000301897 PRAMEF33A0A0G2JMD5 474 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 PDE2AO00408 941 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 PRAMEF10O60809 474 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 PPFIA2O75334 1257 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 PIGNO95427 931 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 CALB1P05937 261 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 GPD1P21695 349 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 SERPINA4P29622 427 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 NSFP46459 744 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 CSNK1DP48730 415 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 POLR2LP62875 67 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 FMO1Q01740 532 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 TCEA2Q15560 299 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 JOSD2Q8TAC2 188 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 PDXPQ96GD0 296 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 SELENOOQ9BVL4 669 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 KLC2Q9H0B6 622 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 RNF215Q9Y6U7 377 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 DOPEY2Q9Y3R5 2298 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 ANKRD36A6QL64 1941 aa14.86□□□□□ -0.03
CCDC88B-201ENST00000301897 NBASA2RRP1 2371 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 HGSO14964 777 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 INSIG1O15503 277 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SUV39H1O43463 412 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 GFPT2O94808 682 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 ELFN1P0C7U0 828 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 ITIH1P19827 911 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 EEF1GP26641 437 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 RFC1P35251 1148 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 TRIM23P36406 574 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 MAPK10P53779 464 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 PEX6Q13608 980 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 HLTFQ14527 1009 aaKnown RBP eCLIP14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 CYTH1Q15438 398 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 MAP9Q49MG5 647 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 PHF19Q5T6S3 580 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SPECC1LQ69YQ0 1117 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 PIM3Q86V86 326 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 DTX1Q86Y01 620 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SLITRK4Q8IW52 837 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 C3orf20Q8ND61 904 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SLC30A5Q8TAD4 765 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SLC20A1Q8WUM9 679 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 OR1E3Q8WZA6 343 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 USP7Q93009 1102 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 EXOC2Q96KP1 924 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 ADNPQ9H2P0 1102 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 DPEP2Q9H4A9 486 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 KCTD5Q9NXV2 234 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 ADAM22Q9P0K1 906 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 BSNQ9UPA5 3926 aa14.85□□□□□ -0.03
CCDC88B-201ENST00000301897 SIGLEC16A6NMB1 481 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 B4DGG1 531 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 STMND1H3BQB6 276 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 CREB3O43889 395 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 RECQL5O94762 991 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 CPNE6O95741 557 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 TPM2P07951 284 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 FAM87AP0C7U9 286 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 KRT10P13645 584 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 ITGB6P18564 788 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 SOX5P35711 763 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 STAT1P42224 750 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 ATP1A2P50993 1020 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 ZNF143P52747 638 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 NDST2P52849 883 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 TBR1Q16650 682 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 TCP11X2Q5H9J9 407 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 CT47A1Q5JQC4 288 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 SCYL2Q6P3W7 929 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 WDR59Q6PJI9 974 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 ZNF574Q6ZN55 896 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 PHLDB2Q86SQ0 1253 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 ZFAND4Q86XD8 727 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 PYROXD2Q8N2H3 581 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 PAF1Q8N7H5 531 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 FUBP1Q96AE4 644 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 MAGEB5Q9BZ81 275 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 TRIM4Q9C037 500 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 SLC25A18Q9H1K4 315 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 WDR26Q9H7D7 661 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 FGF22Q9HCT0 170 aa14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 GEMIN8Q9NWZ8 242 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-201ENST00000301897 TMEM202A6NGA9 273 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 ARHGAP42A6NI28 874 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 EIF3CLB5ME19 914 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 BUB1BO60566 1050 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PRAMEF11O60813 436 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 UNGP13051 313 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 CHRNB2P17787 502 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 BCL2L1Q07817 233 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PTP4A2Q12974 167 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms