RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TULP3O75386 442 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZNF37AP17032 561 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 COPZ1P61923 177 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 MADCAM1Q13477 382 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CYP51A1Q16850 503 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 RNF219Q5W0B1 726 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 R3HCC1LQ7Z5L2 792 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 TXNRD3Q86VQ6 643 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 AGBL3Q8NEM8 1001 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ADAMTS16Q8TE57 1224 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 RNF139Q8WU17 664 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 WDR41Q9HAD4 459 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TUBGCP4Q9UGJ1 667 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TMCC3Q9ULS5 477 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 AAR2Q9Y312 384 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 MYH7BA7E2Y1 1941 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZNF3P17036 446 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 FGFR3P22607 806 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 HNMTP50135 292 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TAS2R40P59535 323 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TFAMQ00059 246 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 CDKL1Q00532 357 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 UAP1L1Q3KQV9 507 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TCHHL1Q5QJ38 904 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 RBM44Q6ZP01 1051 aaKnown RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 METTL6Q8TCB7 284 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 MAFIPQ8WZ33 124 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CENPIQ92674 756 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 SEPHS2Q99611 448 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 CGREF1Q99674 301 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TMEM121Q9BTD3 319 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 IL22Q9GZX6 179 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 IRF2BPLQ9H1B7 796 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ADAMTS10Q9H324 1103 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 ZNF302Q9NR11 478 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TOPORSQ9NS56 1045 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 CISHQ9NSE2 258 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 MOCS1Q9NZB8 636 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 AJAP1Q9UKB5 411 aaPredicted RBP6.44□□□□□ -1.38
VPS35-201ENST00000299138 CHD4Q14839 1912 aa6.44□□□□□ -1.38
VPS35-201ENST00000299138 TRUB2O95900 331 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SUPT20HL2P0C7V6 817 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ATP5F1P24539 256 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SLC9A3P48764 834 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 NUMBP49757 651 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TKTL1P51854 596 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 KCNA10Q16322 511 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 FAM83EQ2M2I3 478 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GFOD2Q3B7J2 385 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 SUPT20HL1Q3ZLR7 823 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS35-201ENST00000299138 LIPMQ5VYY2 423 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PEX5LQ8IYB4 626 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HAVCR1Q96D42 359 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 NT5C1AQ9BXI3 368 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TDRD1Q9BXT4 1180 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 ANKRD60Q9BZ19 345 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRRG3Q9BZD7 231 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 SLITRK2Q9H156 845 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 KRCC1Q9NPI7 259 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 STOX2Q9P2F5 926 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 CROTQ9UKG9 612 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 A3GALT2U3KPV4 340 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TCRBV7S2A1N4TA0A589 114 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 OR14I1A6ND48 311 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 C5orf51A6NDU8 294 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 A8MUI8 341 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRR5-ARHGAP8B1AHC4 643 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GPR25O00155 361 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MYL12BO14950 172 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ATMINO43313 823 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 KCNH1O95259 989 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HPRP00739 348 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PGK2P07205 417 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 BMP2P12643 396 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ARHGAP8P85298 464 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 FSTL1Q12841 308 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 APOFQ13790 326 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 FAM102AQ5T9C2 384 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 IL23RQ5VWK5 629 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MZT2AQ6P582 158 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ZBTB33Q86T24 672 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 DHFR2Q86XF0 187 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MEIOBQ8N635 442 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 FAM71DQ8N9W8 422 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 EEF1AKMT1Q8WVE0 214 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PIGKQ92643 395 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PEX13Q92968 403 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TRIM43Q96BQ3 446 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 GCNAQ96QF7 691 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ADI1Q9BV57 179 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 RIC8BQ9NVN3 520 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SPASTQ9UBP0 616 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MAPRE3Q9UPY8 281 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MYH6P13533 1939 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ISPDA4D126 451 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 UNCXA6NJT0 531 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ACKR2O00590 384 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ITM2AO43736 263 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms