RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TRAFD1O14545 582 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 CCNT2O60583 730 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 DLDP09622 509 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 GNAZP19086 355 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 DRICH1Q6PGQ1 229 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 PAGE2Q7Z2X7 111 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 MIB1Q86YT6 1006 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PTGR2Q8N8N7 351 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 SLC4A11Q8NBS3 891 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PAWRQ96IZ0 340 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 APOL4Q9BPW4 351 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 ZNF670Q9BS34 389 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 LHX5Q9H2C1 402 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 SLC17A6Q9P2U8 582 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 FAM50BQ9Y247 325 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 COL4A5P29400 1685 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 TMEM88BA6NKF7 163 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 STBD1O95210 358 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 ZNF37AP17032 561 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 PTPN1P18031 435 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 DLG2Q15700 870 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 ZDHHC17Q8IUH5 632 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 VPS37AQ8NEZ2 397 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 ACTRT2Q8TDY3 377 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 AZIN2Q96A70 460 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 RPRD1AQ96P16 312 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 U3KQV3 271 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 CPSF4O95639 269 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 KLRC2P26717 231 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 IDH2P48735 452 aaKnown RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 BNIP3Q12983 259 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 SCARA3Q6AZY7 606 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PHTF2Q8N3S3 785 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 TEX12Q9BXU0 123 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 B3GNT5Q9BYG0 378 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PRDM5Q9NQX1 630 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 TYROBPO43914 113 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 TOP3BO95985 862 aaKnown RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 PRIM2P49643 509 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 RAB10P61026 200 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 RAB14P61106 215 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 TFAP2DQ7Z6R9 452 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 AHI1Q8N157 1196 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 AMER2Q8N7J2 671 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 NAT8LQ8N9F0 302 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 B3GALNT2Q8NCR0 500 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 OR52K2Q8NGK3 314 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 SLC35B2Q8TB61 432 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 MCRS1Q96EZ8 462 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 HMX1Q9NP08 348 aaPredicted RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 EHD3Q9NZN3 535 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 C3orf18Q9UK00 162 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 NUDT5Q9UKK9 219 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 PRR23D1E9PI22 279 aaPredicted RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 LTA4HP09960 611 aaKnown RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 PRR23D2P0DMB1 279 aaPredicted RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 CHRM1P11229 460 aaPredicted RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 ENTPD1P49961 510 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 WNT7BP56706 349 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 PIGZQ86VD9 579 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 ERI1Q8IV48 349 aaKnown RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 SPPL2AQ8TCT8 520 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 C16orf70Q9BSU1 422 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 ANKRD12Q6UB98 2062 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 ASGR1P07306 291 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 ITGAXP20702 1163 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 GNA12Q03113 381 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 INSCQ1MX18 579 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 TIGD2Q4W5G0 525 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 PPM1LQ5SGD2 360 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 MILR1Q7Z6M3 343 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 UNC5BQ8IZJ1 945 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 OR2T34Q8NGX1 318 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 OR2T3Q8NH03 318 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 MFSD3Q96ES6 412 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 TSEN34Q9BSV6 310 aaKnown RBP15.42■□□□□ 0.06
SHH-201ENST00000297261 HAPLN2Q9GZV7 340 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 TBC1D13Q9NVG8 400 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 HMGXB4Q9UGU5 601 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 FBXO5Q9UKT4 447 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 DERAQ9Y315 318 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 NR2E3Q9Y5X4 410 aa15.42■□□□□ 0.06
SHH-201ENST00000297261 WBP4O75554 376 aaKnown RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 GUCA1CO95843 209 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 TPTEP56180 551 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 SLC9A4Q6AI14 798 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 ZNF540Q8NDQ6 660 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 ADI1Q9BV57 179 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 PCDHGC3Q9UN70 934 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 GPC6Q9Y625 555 aaPredicted RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 CLDN5O00501 218 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 CHRNGP07510 517 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 SLC9B1Q4ZJI4 515 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 C6orf183Q5T699 404 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 ANKRD52Q8NB46 1076 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 SNX27Q96L92 541 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 FANCEQ9HB96 536 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 PCDHB12Q9Y5F1 795 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 FBXO21O94952 628 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 UGT1A6P19224 532 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms