RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PDE1BQ01064 536 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SLC10A7Q0GE19 358 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 CDH18Q13634 790 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 TEAD2Q15562 447 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SLC14A2Q15849 920 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 OR52K1Q8NGK4 314 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 TTC8Q8TAM2 541 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PPP4R1Q8TF05 950 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 DDI1Q8WTU0 396 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 WBP2Q969T9 261 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 OTUB2Q96DC9 234 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 RBBP8Q99708 897 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 TBL1YQ9BQ87 522 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 GORASP1Q9BQQ3 440 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SFXN1Q9H9B4 322 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PDFQ9HBH1 243 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 UBA2Q9UBT2 640 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 DENND4CQ5VZ89 1909 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 CXorf51AA0A1B0GTR3 108 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 KLHL2O95198 593 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 MPOP05164 745 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 GJA1P17302 382 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 WEE1P30291 646 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PGM1P36871 562 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 CCR2P41597 374 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PTDSS1P48651 473 aaKnown RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SLC1A6P48664 564 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 LIMK2P53671 638 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ZXDBP98169 803 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SLC12A1Q13621 1099 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PCLAFQ15004 111 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 ZRSR2Q15696 482 aaKnown RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PRSS36Q5K4E3 855 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 RNF219Q5W0B1 726 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 NET1Q7Z628 596 aaPredicted RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 METTL3Q86U44 580 aaKnown RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 CARNMT1Q8N4J0 409 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SH3RF2Q8TEC5 729 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 PTCD2Q8WV60 388 aaKnown RBP16.91■□□□□ 0.3
CPSF4-201ENST00000292476 NSMCE4AQ9NXX6 385 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 MID2Q9UJV3 735 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 RPS6KL1Q9Y6S9 549 aa16.91■□□□□ 0.3
CPSF4-201ENST00000292476 SHROOM3Q8TF72 1996 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 A0A0D9SEW6 157 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 SLC9A3R1O14745 358 aaPredicted RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 HOXD9P28356 352 aaPredicted RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 VHLP40337 213 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 CRADDP78560 199 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 AAK1Q2M2I8 961 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 TRMT5Q32P41 509 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 KHDC1Q4VXA5 237 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 C6orf163Q5TEZ5 329 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 POTEHQ6S545 545 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 GRASPQ7Z6J2 395 aaPredicted RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 LCA5Q86VQ0 697 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 TREML1Q86YW5 311 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 MFN1Q8IWA4 741 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 UNC5BQ8IZJ1 945 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 GPATCH11Q8N954 259 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 OR7D4Q8NG98 312 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 OR6Y1Q8NGX8 325 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 SREK1Q8WXA9 508 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 SMG7Q92540 1137 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 STMN2Q93045 179 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 PSKH2Q96QS6 385 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 CINPQ9BW66 212 aaPredicted RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 C20orf27Q9GZN8 174 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 CLEC1BQ9P126 229 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 STX18Q9P2W9 335 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 COPG2Q9UBF2 871 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 PLA2G4CQ9UP65 541 aa16.9■□□□□ 0.3
CPSF4-201ENST00000292476 MRPS23Q9Y3D9 190 aaKnown RBP16.9■□□□□ 0.3
CPSF4-201ENST00000292476 NYNRINQ9P2P1 1898 aaKnown RBP16.89■□□□□ 0.3
CPSF4-201ENST00000292476 B2RBV5 119 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TIMM44O43615 452 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 MOSPD3O75425 235 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TM7SF2O76062 418 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 PSMG1O95456 288 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TYK2P29597 1187 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 SGSHP51688 502 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 KPNB1Q14974 876 aaKnown RBP16.89■□□□□ 0.29
CPSF4-201ENST00000292476 NAA25Q14CX7 972 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 LEXMQ3ZCV2 418 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 INO80DQ53TQ3 878 aaPredicted RBP16.89■□□□□ 0.29
CPSF4-201ENST00000292476 ACSBG2Q5FVE4 666 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TJAP1Q5JTD0 557 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 FAM182AQ5T1J6 154 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 ALG1LQ6GMV1 187 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 CXorf57Q6NSI4 855 aaKnown RBP16.89■□□□□ 0.29
CPSF4-201ENST00000292476 BBS7Q8IWZ6 715 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 IPMKQ8NFU5 416 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 SPATA22Q8NHS9 363 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 STON2Q8WXE9 905 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 ACDQ96AP0 544 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TCEAL4Q96EI5 215 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 C2orf49Q9BVC5 232 aaPredicted RBP16.89■□□□□ 0.29
CPSF4-201ENST00000292476 ARNT2Q9HBZ2 717 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 UBP1Q9NZI7 540 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 KIAA1522Q9P206 1035 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms