RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 WASP42768 502 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RXRGP48443 463 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SKP1P63208 163 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RHBDF2Q6PJF5 856 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 TSHZ1Q6ZSZ6 1077 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 GPR180Q86V85 440 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RNASE11Q8TAA1 199 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 BSNDQ8WZ55 320 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 COPS8Q99627 209 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 BCL2L14Q9BZR8 327 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 TRBV23OR9-2A0A075B6M9 112 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 TMEM191CA6NGB0 347 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ASNA1O43681 348 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 HIST1H2ABP04908 130 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ZNHIT3Q15649 155 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 TIGD2Q4W5G0 525 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ALKBH2Q6NS38 261 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 HIST3H2AQ7L7L0 130 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SH3BP5LQ7L8J4 393 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 PHF10Q8WUB8 498 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 DLG3Q92796 817 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 HIST1H2ACQ93077 130 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 C19orf60Q96EN9 201 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 POLR1BQ9H9Y6 1135 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 MAT2BQ9NZL9 334 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 POLR3HQ9Y535 204 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 VWDEQ8N2E2 1590 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 TCRBV7S2A1N4TA0A589 114 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 CCL22O00626 93 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 DRD4P21917 467 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 AQP1P29972 269 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 CDC42P60953 191 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 GBE1Q04446 702 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 PRKG2Q13237 762 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 IRGCQ6NXR0 463 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 KLHL23Q8NBE8 558 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ZNF540Q8NDQ6 660 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ST13P5Q8NFI4 369 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 OR52E6Q96RD3 313 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 S100A13Q99584 98 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 IMP3Q9NV31 184 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 IKZF3Q9UKT9 509 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ARIH1Q9Y4X5 557 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 ACTL7BQ9Y614 415 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SESN1Q9Y6P5 492 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 OTCP00480 354 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 DBTP11182 482 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 BUD31P41223 144 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 RABGGTBP53611 331 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 DEFB115Q30KQ5 88 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SLC25A52Q3SY17 297 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SNAP47Q5SQN1 464 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RFWD3Q6PCD5 774 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 DNAJC1Q96KC8 554 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 INPP4AQ96PE3 977 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 MRIQ9BWK5 157 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 LRRC4CQ9HCJ2 640 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 GIT1Q9Y2X7 761 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 SMIM28A0A1B0GU29 152 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RFXANKO14593 260 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 MSCO60682 206 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 FSBPO95073 299 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 FTH1P02794 183 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ELFN1P0C7U0 828 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 CXCR2P25025 360 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 RGMBQ6NW40 437 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 LINGO4Q6UY18 593 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ADAMTSL2Q86TH1 951 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 ZNF655Q8N720 491 aaPredicted RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 MOSPD2Q8NHP6 518 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 UBE2E3Q969T4 207 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 FAIM2Q9BWQ8 316 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 AGO3Q9H9G7 860 aaKnown RBP11.5□□□□□ -0.57
USP53-201ENST00000274030 PRDM16Q9HAZ2 1276 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 COQ6Q9Y2Z9 468 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 PTCH2Q9Y6C5 1203 aa11.5□□□□□ -0.57
USP53-201ENST00000274030 NPEPPSL1A6NEC2 478 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 PRR5-ARHGAP8B1AHC4 643 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 TREHO43280 583 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 TLL1O43897 1013 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 OR10H3O60404 316 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 SLC35G4P0C7Q5 338 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 ARHGAP8P85298 464 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 ILF2Q12905 390 aaKnown RBP11.49□□□□□ -0.57
USP53-201ENST00000274030 RNF43Q68DV7 783 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 ABHD15Q6UXT9 468 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 DEF8Q6ZN54 512 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 NET1Q7Z628 596 aaPredicted RBP11.49□□□□□ -0.57
USP53-201ENST00000274030 MON1AQ86VX9 555 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 LRRC52Q8N7C0 313 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 PNPT1Q8TCS8 783 aaKnown RBP11.49□□□□□ -0.57
USP53-201ENST00000274030 IPCEF1Q8WWN9 437 aaPredicted RBP11.49□□□□□ -0.57
USP53-201ENST00000274030 TSSK3Q96PN8 268 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 FTHL17Q9BXU8 183 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 CLIC5Q9NZA1 410 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 CFAP97Q9P2B7 532 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 ALOX15BO15296 676 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 ABHD2P08910 425 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 PRG2P13727 222 aa11.49□□□□□ -0.57
USP53-201ENST00000274030 MAPK8P45983 427 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms