RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ADRA1AP35348 466 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 AGAP9Q5VTM2 703 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 RGMBQ6NW40 437 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 MON1AQ86VX9 555 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 LILRA2Q8N149 483 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 C2CD4AQ8NCU7 369 aaPredicted RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 CEP70Q8NHQ1 597 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 PTERQ96BW5 349 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 NMD3Q96D46 503 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 SIKE1Q9BRV8 207 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 MID1IP1Q9NPA3 183 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 SNX13Q9Y5W8 968 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 COMMD10Q9Y6G5 202 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 HEATR9A2RTY3 570 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 CBX4O00257 560 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 MT-ND1P03886 318 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 ITGB6P18564 788 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 RPL10P27635 214 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 HADHAP40939 763 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 SEMA3AQ14563 771 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 MBTPS1Q14703 1052 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 BRMS1LQ5PSV4 323 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 SAPCD2Q86UD0 394 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 PTGR2Q8N8N7 351 aaPredicted RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 ZNF512Q96ME7 567 aaPredicted RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 MRPL1Q9BYD6 325 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 STN1Q9H668 368 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 TREX1Q9NSU2 369 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.69■□□□□ 0.262e-6■■□□□ 11.7
VPS54-201ENST00000272322 MID2Q9UJV3 735 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 AURKCQ9UQB9 309 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 CCDC162PA2VCL2 907 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 TCAF2A6NFQ2 919 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 TARM1B6A8C7 271 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 NR5A2O00482 541 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 FGF10O15520 208 aaPredicted RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 LTA4HP09960 611 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 MYL4P12829 197 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 ALOX15P16050 662 aaPredicted RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 UGT1A6P19224 532 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 MAPRE1Q15691 268 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 IL23RQ5VWK5 629 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 TAS1R1Q7RTX1 841 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 PDSS2Q86YH6 399 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 PQLC1Q8N2U9 271 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 SOCS4Q8WXH5 440 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 IRGQQ8WZA9 623 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 SLC25A51Q9H1U9 297 aa16.69■□□□□ 0.26
VPS54-201ENST00000272322 PAPOLBQ9NRJ5 636 aaKnown RBP16.69■□□□□ 0.26
VPS54-201ENST00000272322 FAM149AA5PLN7 773 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 IQCF5A8MTL0 148 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ENPP3O14638 875 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 TLR5O60602 858 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 CRABP2P29373 138 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 FUT11Q495W5 492 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 SATL1Q86VE3 508 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 SERPINI1Q99574 410 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 PKMYT1Q99640 499 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ZBTB26Q9HCK0 441 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 RNF186Q9NXI6 227 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 MANSC4A6NHS7 340 aaPredicted RBP16.68■□□□□ 0.26
VPS54-201ENST00000272322 M0QZQ0 153 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 SEPT4O43236 478 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ME2P23368 584 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 CA8P35219 290 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 RGRP47804 291 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 MGAT3Q09327 533 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 PDK3Q15120 406 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 TIGD7Q6NT04 549 aaPredicted RBP16.68■□□□□ 0.26
VPS54-201ENST00000272322 C16orf89Q6UX73 402 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 RNF19BQ6ZMZ0 732 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ZNF598Q86UK7 904 aaKnown RBP16.68■□□□□ 0.26
VPS54-201ENST00000272322 KBTBD6Q86V97 674 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 CILP2Q8IUL8 1156 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 DENND1CQ8IV53 801 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 RP9Q8TA86 221 aaKnown RBP16.68■□□□□ 0.26
VPS54-201ENST00000272322 SPPL2BQ8TCT7 592 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 PPP2R3CQ969Q6 453 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ISL2Q96A47 359 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 TSGA13Q96PP4 275 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 TRAF6Q9Y4K3 522 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 PSMD12O00232 456 aaPredicted RBP16.68■□□□□ 0.26
VPS54-201ENST00000272322 CRCPO75575 148 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 IGLV3-25P01717 112 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 APOA4P06727 396 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 PSME3P61289 254 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 TLR1Q15399 786 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 VPS26BQ4G0F5 336 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 KDELC1Q6UW63 502 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 DCUN1D1Q96GG9 259 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ABCG8Q9H221 673 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 STK39Q9UEW8 545 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 ANKRD6Q9Y2G4 727 aa16.68■□□□□ 0.26
VPS54-201ENST00000272322 FKBP1BP68106 108 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 RPS6KA2Q15349 733 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 TMCO2Q7Z6W1 182 aaPredicted RBP16.67■□□□□ 0.26
VPS54-201ENST00000272322 LZTR1Q8N653 840 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 GALPQ9UBC7 116 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 RAD54BQ9Y620 910 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 SUPT3HB4E1H0 165 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms