RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GRIN3AQ8TCU5 1115 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 PAIP1Q9H074 479 aaKnown RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 LHX5Q9H2C1 402 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 KLHL1Q9NR64 748 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 C1orf232A0A0U1RR37 186 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 KRT36O76013 467 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 COX4I1P13073 169 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 GOT1P17174 413 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 CRATP43155 626 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 CSNK2BP67870 215 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 CDK18Q07002 472 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 PTGES3Q15185 160 aaKnown RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 NDUFA9Q16795 377 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 STRADAQ7RTN6 431 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 TRIM63Q969Q1 353 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 TEFMQ96QE5 360 aaKnown RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 COPS8Q99627 209 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 C8orf4Q9NR00 106 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 FBXO6Q9NRD1 293 aaPredicted RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 ST3GAL5Q9UNP4 418 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 TCRBV9S1A1TA0A576 114 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 NRF1Q16656 503 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 KLHL23Q8NBE8 558 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 MARK4Q96L34 752 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 GAS2L1Q99501 681 aaPredicted RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 FAM192AQ9GZU8 254 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 CYLDQ9NQC7 956 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 RBM47A0AV96 593 aaKnown RBP19.21■□□□□ 0.67
UPF1-201ENST00000262803 TLL1O43897 1013 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 ENKURQ8TC29 256 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 RIT1Q92963 219 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 ZNF780BQ9Y6R6 833 aa19.21■□□□□ 0.67
UPF1-201ENST00000262803 ITGA2BP08514 1039 aa19.21■□□□□ 0.66
UPF1-201ENST00000262803 GRIA4P48058 902 aa19.21■□□□□ 0.66
UPF1-201ENST00000262803 SRFBP1Q8NEF9 429 aaKnown RBP19.21■□□□□ 0.66
UPF1-201ENST00000262803 LRRN4Q8WUT4 740 aa19.21■□□□□ 0.66
UPF1-201ENST00000262803 LGMNQ99538 433 aa19.21■□□□□ 0.66
UPF1-201ENST00000262803 SEMA3GQ9NS98 782 aa19.21■□□□□ 0.66
UPF1-201ENST00000262803 A0A1W2PPM1 405 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 SNRPB2P08579 225 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 PRKAR2AP13861 404 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 PNLIPRP1P54315 467 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 SMAD3P84022 425 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 HSPA14Q0VDF9 509 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 EEF1DP3Q658K8 133 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 KIAA0408Q6ZU52 694 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 ZCCHC7Q8N3Z6 543 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 RP9Q8TA86 221 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 ITCHQ96J02 903 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 ACE2Q9BYF1 805 aaPredicted RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 TMEM191CA6NGB0 347 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 PTGES3LE9PB15 166 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 FGFR3P22607 806 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 GSSP48637 474 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 NDUFV1P49821 464 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 DUSP28Q4G0W2 176 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 MZT2BQ6NZ67 158 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 FAM35AQ86V20 835 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 RASAL3Q86YV0 1011 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 SEMA3CQ99985 751 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 BRD9Q9H8M2 597 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 ZNHIT2Q9UHR6 403 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 PACSIN3Q9UKS6 424 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 AP3D1O14617 1153 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 EDF1O60869 148 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 KRT33AO76009 404 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 MFN2O95140 757 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 PPIGQ13427 754 aaKnown RBP eCLIP19.2■□□□□ 0.664e-7■■□□□ 14.1
UPF1-201ENST00000262803 NR1D2Q14995 579 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 FAM92BQ6ZTR7 304 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 CHSY3Q70JA7 882 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 LMAN2LQ9H0V9 348 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 MRPS17Q9Y2R5 130 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 RAP2CQ9Y3L5 183 aa19.2■□□□□ 0.66
UPF1-201ENST00000262803 DDX3YO15523 660 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 CLP1Q92989 425 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 REXO5Q96IC2 774 aaKnown RBP19.2■□□□□ 0.66
UPF1-201ENST00000262803 B4GALT5O43286 388 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 BUD23O43709 281 aaKnown RBP19.19■□□□□ 0.66
UPF1-201ENST00000262803 HLA-DQA2P01906 255 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 SELPP16109 830 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 ENPEPQ07075 957 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 TOMM20Q15388 145 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 MAPKAPK3Q16644 382 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 INTS6LQ5JSJ4 861 aaKnown RBP19.19■□□□□ 0.66
UPF1-201ENST00000262803 CEP68Q76N32 757 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 FAM105AQ9NUU6 356 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 EXD2Q9NVH0 621 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 C3orf18Q9UK00 162 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 SLC12A4Q9UP95 1085 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 BBIP1A8MTZ0 92 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 UGT2B15P54855 530 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 SLAIN1Q8ND83 568 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 ZNF671Q8TAW3 534 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 EEF1AKMT1Q8WVE0 214 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 GRIP2Q9C0E4 1043 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 EFR3BQ9Y2G0 817 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 KIF1AQ12756 1690 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 HDAC3O15379 428 aa19.19■□□□□ 0.66
UPF1-201ENST00000262803 PPP1R11O60927 126 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms