RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLAMF8Q9P0V8 285 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 LOXHD1Q8IVV2 1947 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 ANGPT2O15123 496 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 SLC4A1P02730 911 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 FSHRP23945 695 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 PTPN3P26045 913 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 RPS9P46781 194 aaKnown RBP14.43□□□□□ -0.1
SDC1-201ENST00000254351 EFNA5P52803 228 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 IFITM3Q01628 133 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 ZBTB17Q13105 803 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 TMEM236Q5W0B7 351 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 ZNF470Q6ECI4 717 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 PSTKQ8IV42 348 aaKnown RBP14.43□□□□□ -0.1
SDC1-201ENST00000254351 HS3ST5Q8IZT8 346 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 DCBLD1Q8N8Z6 715 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 ANKRD52Q8NB46 1076 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 HDAC11Q96DB2 347 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 GMLQ99445 158 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 NAT9Q9BTE0 207 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 DEFB129Q9H1M3 183 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 CCDC68Q9H2F9 335 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 SMPD3Q9NY59 655 aaPredicted RBP14.43□□□□□ -0.1
SDC1-201ENST00000254351 CD300AQ9UGN4 299 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 NME7Q9Y5B8 376 aa14.43□□□□□ -0.1
SDC1-201ENST00000254351 EEF2KO00418 725 aaKnown RBP14.42□□□□□ -0.1
SDC1-201ENST00000254351 NOBOXO60393 691 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 B4GALT4O60513 344 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 BMP2P12643 396 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 IDO1P14902 403 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 LMO2P25791 158 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 SHMT2P34897 504 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 IL1RL1Q01638 556 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 ENPEPQ07075 957 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 AQP6Q13520 282 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 INPP5AQ14642 412 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 RFTN1Q14699 578 aaPredicted RBP14.42□□□□□ -0.1
SDC1-201ENST00000254351 TMEM132DQ14C87 1099 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CYBRD1Q53TN4 286 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CRTC3Q6UUV7 619 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 HEATR4Q86WZ0 1026 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 RALGPS2Q86X27 583 aaPredicted RBP14.42□□□□□ -0.1
SDC1-201ENST00000254351 ANKFN1Q8N957 763 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 STARD8Q92502 1023 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 SEPT8Q92599 483 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 ALPK1Q96QP1 1244 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 C1orf50Q9BV19 199 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 MLPHQ9BV36 600 aaPredicted RBP14.42□□□□□ -0.1
SDC1-201ENST00000254351 IL22Q9GZX6 179 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 DPP3Q9NY33 737 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 GIT1Q9Y2X7 761 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 TCAF1Q9Y4C2 921 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 PLA2G6O60733 806 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 ALBP02768 609 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 VTNP04004 478 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CAPNS1P04632 268 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CYP2C9P11712 490 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 PRKAA2P54646 552 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 ECT2LQ008S8 904 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CXCL9Q07325 125 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 STXBP2Q15833 593 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 PCSK7Q16549 785 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 SYPL2Q5VXT5 272 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 THOC7Q6I9Y2 204 aaKnown RBP14.42□□□□□ -0.1
SDC1-201ENST00000254351 FUNDC1Q8IVP5 155 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 GNPTGQ9UJJ9 305 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 NUDT5Q9UKK9 219 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 CDH7Q9ULB5 785 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 RAD54BQ9Y620 910 aa14.42□□□□□ -0.1
SDC1-201ENST00000254351 ARPC2O15144 300 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SNAP91O60641 907 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ALDOCP09972 364 aaKnown RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 TGFBR1P36897 503 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 PLA2G16P53816 162 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 OCA2Q04671 838 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 LAPTM5Q13571 262 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SLC10A6Q3KNW5 377 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 EFCAB12Q6NXP0 572 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CYS1Q717R9 158 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 R3HCC1LQ7Z5L2 792 aaKnown RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 TMEM135Q86UB9 458 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SLCO6A1Q86UG4 719 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 STK32CQ86UX6 486 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SCAIQ8N9R8 606 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SYT17Q9BSW7 474 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SLC25A23Q9BV35 468 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 TPK1Q9H3S4 243 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CCM2LQ9NUG4 571 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 TMEM181Q9P2C4 612 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CSADQ9Y600 493 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 A0A087WZ62 844 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CLDN5O00501 218 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 KPNA4O00629 521 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 PMPCBO75439 489 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SIX3O95343 332 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 CAPN3P20807 821 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 PAX3P23760 479 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CAPGP40121 348 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 RAB10P61026 200 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ADIGQ0VDE8 80 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 GRB7Q14451 532 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms