RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 STX1BP61266 288 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 SAMD4BQ5PRF9 694 aaKnown RBP18.8■□□□□ 0.6
CPSF3-201ENST00000238112 ARTNQ5T4W7 220 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 CLEC6AQ6EIG7 209 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 OR13J1Q8NGT2 312 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 LRTOMTQ8WZ04 291 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 SERPINB11Q96P15 392 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 VPS45Q9NRW7 570 aa18.8■□□□□ 0.6
CPSF3-201ENST00000238112 A0A1B0GVG6 124 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 H0YJX3 145 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 NRP2O60462 931 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 CSPG5O95196 566 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 PAPSS2O95340 614 aaPredicted RBP18.79■□□□□ 0.6
CPSF3-201ENST00000238112 MT-CO1P00395 513 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 PRAMEP78395 509 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 LAYNQ6UX15 382 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 B3GNT6Q6ZMB0 384 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 GALNT7Q86SF2 657 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SCD5Q86SK9 330 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 PBXIP1Q96AQ6 731 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 EFHD1Q9BUP0 239 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 ATP13A1Q9HD20 1204 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 FNIP2Q9P278 1114 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SNX13Q9Y5W8 968 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 AK5Q9Y6K8 562 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 MYOCOSA0A1B0GUC4 107 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 GPR182O15218 404 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SLC7A4O43246 635 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 YWHAQP27348 245 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 MLLT6P55198 1093 aaPredicted RBP18.79■□□□□ 0.6
CPSF3-201ENST00000238112 MAP7D1Q3KQU3 841 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 GPR158Q5T848 1215 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 MARC1Q5VT66 337 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 FAM45BPQ6NSW5 357 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 KLHDC10Q6PID8 442 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 TFAP2DQ7Z6R9 452 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 ZNF354CQ86Y25 554 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 HERC6Q8IVU3 1022 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 PNPLA1Q8N8W4 532 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SNX31Q8N9S9 440 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 FAM45AQ8TCE6 357 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 PABPC5Q96DU9 382 aaKnown RBP18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SLC2A11Q9BYW1 496 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 SENP6Q9GZR1 1112 aaPredicted RBP18.79■□□□□ 0.6
CPSF3-201ENST00000238112 COQ10BQ9H8M1 238 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 OSER1Q9NX31 292 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 DMTF1Q9Y222 760 aa18.79■□□□□ 0.6
CPSF3-201ENST00000238112 A0A1W2PQH9 124 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ANKRD33BA6NCL7 494 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 WASH4PA8MWX3 477 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 M0QZQ0 153 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 UBFD1O14562 309 aaKnown RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 PEX11BO96011 259 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 CHRNA1P02708 482 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 TSPAN8P19075 237 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 SLC7A1P30825 629 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 CDKN2DP55273 166 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 NRG1Q02297 640 aaPredicted RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 USP41Q3LFD5 358 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ZNF678Q5SXM1 525 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 CYP2R1Q6VVX0 501 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 MRPL10Q7Z7H8 261 aaKnown RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 LDB1Q86U70 411 aaPredicted RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 RSPH1Q8WYR4 309 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 C19orf60Q96EN9 201 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 KLHL5Q96PQ7 755 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 MFSD1Q9H3U5 465 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 NOL6Q9H6R4 1146 aaKnown RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 NMUR1Q9HB89 426 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 NYNRINQ9P2P1 1898 aaKnown RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ATP6AP2A0A1C7CYW4 349 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ARHGEF37A1IGU5 675 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ATP6AP2O75787 350 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 HSPA8P11142 646 aaKnown RBP18.78■□□□□ 0.6
CPSF3-201ENST00000238112 FGFR3P22607 806 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 SLC26A3P40879 764 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 APOFQ13790 326 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 SCN4BQ8IWT1 228 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 OR9I1Q8NGQ6 314 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 HDAC10Q969S8 669 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 L3HYPDHQ96EM0 354 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 HMCESQ96FZ2 354 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 HIC2Q96JB3 615 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 ZNF597Q96LX8 424 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 OSBPL11Q9BXB4 747 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 SP110Q9HB58 689 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 TMEM181Q9P2C4 612 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 CD300AQ9UGN4 299 aa18.78■□□□□ 0.6
CPSF3-201ENST00000238112 TCRBV3S1A0A5B6 114 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 ARHGAP10A1A4S6 786 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 J3KR12 359 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 TNFRSF10BO14763 440 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 PENKP01210 267 aaPredicted RBP18.77■□□□□ 0.6
CPSF3-201ENST00000238112 ACADVLP49748 655 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 ATP4BP51164 291 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 NDST2P52849 883 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 NR1H2P55055 460 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 DSC2Q02487 901 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 SLC10A7Q0GE19 358 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 LAMB3Q13751 1172 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms