RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 GLT6D1Q7Z4J2 308 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 SLITRK4Q8IW52 837 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ZNF548Q8NEK5 533 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 TNFAIP8L1Q8WVP5 186 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FRMD6Q96NE9 622 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 GPR101Q96P66 508 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 TCF12Q99081 682 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 C7orf50Q9BRJ6 194 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 GSDMCQ9BYG8 508 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 WDR37Q9Y2I8 494 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 COLEC10Q9Y6Z7 277 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 N4BP2Q86UW6 1770 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ANKRD36A6QL64 1941 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 EPCAMP16422 314 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 F8A1P23610 371 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CYP2F1P24903 491 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 OR1E1P30953 314 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ULK3Q6PHR2 472 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 OFCC1Q8IZS5 231 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FUKQ8N0W3 1084 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 KLHL23Q8NBE8 558 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 SLC4A11Q8NBS3 891 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ZNF507Q8TCN5 953 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 AHCYL2Q96HN2 611 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RDH12Q96NR8 316 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RAB11FIP5Q9BXF6 653 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 COMMD4Q9H0A8 199 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CAB39LQ9H9S4 337 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RC3H2Q9HBD1 1191 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CYP3A7-CYP3A51PA0A087WV96 503 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 TEX13CA0A0J9YWL9 993 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 DDX3XO00571 662 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 PSMG1O95456 288 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FGFR1P11362 822 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 PTPN1P18031 435 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CYP3A7P24462 503 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 DSG3P32926 999 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ATCAYQ86WG3 371 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 YIPF2Q9BWQ6 316 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 NFKBIZQ9BYH8 718 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 DNAJC16Q9Y2G8 782 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RIIAD1A6NNX1 92 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 STAU1O95793 577 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CDK18Q07002 472 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 BOP1Q14137 746 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FTMTQ8N4E7 242 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ACTL9Q8TC94 416 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 TUBGCP5Q96RT8 1024 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RAVER2Q9HCJ3 691 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ZNF221Q9UK13 617 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 GMPPBQ9Y5P6 360 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 METTL18O95568 372 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 MOCS2O96007 188 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 NPR2P20594 1047 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 NOS2P35228 1153 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ARCN1P48444 511 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 DOK7Q18PE1 504 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 BRMS1LQ5PSV4 323 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ARMC12Q5T9G4 340 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 IQSEC1Q6DN90 963 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RPL13AP3Q6NVV1 102 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 DNM1P34Q6PK57 102 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FBXW8Q8N3Y1 598 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CASKIN2Q8WXE0 1202 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 VPS35Q96QK1 796 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 TBL1YQ9BQ87 522 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 GLS2Q9UI32 602 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 C5orf60A6NFR6 353 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 THOP1P52888 689 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 PCSK7Q16549 785 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RALGPS1Q5JS13 557 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 BTN2A1Q7KYR7 527 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 RIOX2Q8IUF8 465 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 FAM20CQ8IXL6 584 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 ZNF420Q8TAQ5 688 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 NMD3Q96D46 503 aaKnown RBP6.1□□□□□ -1.43
VPS13D-201ENST00000011700 MED28Q9H204 178 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 GDF3Q9NR23 364 aa6.1□□□□□ -1.43
VPS13D-201ENST00000011700 CNTNAP4Q9C0A0 1308 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 MYOM1P52179 1685 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 SCGNO76038 276 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 CBWD3Q5JTY5 395 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 CBWD5Q5RIA9 395 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 S100A7AQ86SG5 101 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 ZNF554Q86TJ5 538 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 UNC5BQ8IZJ1 945 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 TTC29Q8NA56 475 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-201ENST00000011700 OR4C15Q8NGM1 316 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 DDX17Q92841 729 aaKnown RBP6.09□□□□□ -1.43
VPS13D-201ENST00000011700 OTUB2Q96DC9 234 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 GORASP1Q9BQQ3 440 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 MND1Q9BWT6 205 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 ABI3Q9P2A4 366 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 XPR1Q9UBH6 696 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 DICER1Q9UPY3 1922 aaKnown RBP6.09□□□□□ -1.43
VPS13D-201ENST00000011700 DDX60Q8IY21 1712 aaKnown RBP6.09□□□□□ -1.43
VPS13D-201ENST00000011700 CAPN14A8MX76 684 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 SEC23BQ15437 767 aa6.09□□□□□ -1.43
VPS13D-201ENST00000011700 SYT16Q17RD7 645 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms