RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	CSNK1G1	Q9HCP0	422 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	PLK2	Q9NYY3	685 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	MPP6	Q9NZW5	540 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	EPS15L1	Q9UBC2	864 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	SUCO	Q9UBS9	1254 aa	Known RBP	13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021		A0A087X1B8	175 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	CCL22	O00626	93 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	PAGE1	O75459	146 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	BEX3	Q00994	111 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	POU4F1	Q01851	419 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	MTX3	Q5HYI7	312 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	LDLRAD1	Q5T700	205 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	OLFML2B	Q68BL8	750 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	HMBOX1	Q6NT76	420 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	TMEM207	Q6UWW9	146 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	MYO1H	Q8N1T3	1032 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	TMEM209	Q96SK2	561 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	FSD1L	Q9BXM9	530 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	CD300A	Q9UGN4	299 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	SARDH	Q9UL12	918 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	BLOC1S6	Q9UL45	172 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	SNX13	Q9Y5W8	968 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	PTCH2	Q9Y6C5	1203 aa		13.92	□□□□□ -0.18
PHGDH-233	ENST00000642021	PLOD2	O00469	737 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	PSMC3	P17980	439 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	SLC5A2	P31639	672 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	PSEN2	P49810	448 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ZNF135	P52742	658 aa	Predicted RBP	13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ZNF33A	Q06730	810 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	STX5	Q13190	355 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	IHH	Q14623	411 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	C6orf10	Q5SRN2	563 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	IL31	Q6EBC2	164 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	HERC6	Q8IVU3	1022 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	TMIGD2	Q96BF3	282 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	LRCH3	Q96II8	777 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	MS4A4A	Q96JQ5	239 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ZNF597	Q96LX8	424 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	C3orf30	Q96M34	536 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	CIB1	Q99828	191 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ENTPD7	Q9NQZ7	604 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ARHGEF38	Q9NXL2	777 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	ATXN10	Q9UBB4	475 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	CNOT11	Q9UKZ1	510 aa	Known RBP	13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	CDH9	Q9ULB4	789 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	PLXNB2	O15031	1838 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	IGLV3-25	P01717	112 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	CKMT2	P17540	419 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	GEM	P55040	296 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	FAM83E	Q2M2I3	478 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	C14orf80	Q86SX3	495 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	LRRTM3	Q86VH5	581 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	TMEM86A	Q8N2M4	240 aa		13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	FCRL2	Q96LA5	508 aa	Predicted RBP	13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	NOL11	Q9H8H0	719 aa	Known RBP	13.91	□□□□□ -0.18
PHGDH-233	ENST00000642021	TTC24	A2A3L6	582 aa	Predicted RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	HEATR9	A2RTY3	570 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	RPL10	P27635	214 aa	Known RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	HSPA13	P48723	471 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	WNT3A	P56704	352 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	YBX1	P67809	324 aa	Known RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	SQLE	Q14534	574 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	FUNDC1	Q8IVP5	155 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	NUP93	Q8N1F7	819 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	GSTO2	Q9H4Y5	243 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	TRAF6	Q9Y4K3	522 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	CEPT1	Q9Y6K0	416 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	TCRBV3S1	A0A5B6	114 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	HAS3	O00219	553 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	PPP6C	O00743	305 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	GPC4	O75487	556 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	TH	P07101	528 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	SNRPB2	P08579	225 aa	Known RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	SCNN1G	P51170	649 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	MAX	P61244	160 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	TLK2	Q86UE8	772 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	UBXN10	Q96LJ8	280 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	MRM3	Q9HC36	420 aa	Known RBP	13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	SPAG4	Q9NPE6	437 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	DMTF1	Q9Y222	760 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	MYLK	Q15746	1914 aa		13.9	□□□□□ -0.18
PHGDH-233	ENST00000642021	ARHGEF37	A1IGU5	675 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	MRAS	O14807	208 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	IRAK2	O43187	625 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	NRP2	O60462	931 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	TIPRL	O75663	272 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	MYL3	P08590	195 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	LTA4H	P09960	611 aa	Known RBP	13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	NR1H2	P55055	460 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	CDH13	P55290	713 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	TXNL4A	P83876	142 aa	Known RBP	13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	MANEAL	Q5VSG8	457 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	AGAP9	Q5VTM2	703 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.89	□□□□□ -0.19	2e-6	■□□□□ 11.3
PHGDH-233	ENST00000642021	RETREG3	Q86VR2	466 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	CARM1	Q86X55	608 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	OR13J1	Q8NGT2	312 aa		13.89	□□□□□ -0.19
PHGDH-233	ENST00000642021	PTCD2	Q8WV60	388 aa	Known RBP	13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms