RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PASKQ96RG2 1323 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 A0A1B0GW55 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 A4D1N5 150 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF891A8MT65 544 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ZDHHC11BP0C7U3 371 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L2P0CJ85 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L3P0CJ86 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L4P0CJ87 422 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L5P0CJ88 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L6P0CJ89 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4L7P0CJ90 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 YWHABP31946 246 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GABRB2P47870 512 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TSPAN5P62079 268 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PIGHQ14442 188 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NFIXQ14938 502 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PFKFB3Q16875 520 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SAPCD1Q5SSQ6 148 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FNBP1LQ5T0N5 605 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SLC22A10Q63ZE4 541 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 COMMD1Q8N668 190 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RASGEF1AQ8N9B8 481 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ETNPPLQ8TBG4 499 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 BPIFB1Q8TDL5 484 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 HSD17B8Q92506 261 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GAL3ST3Q96A11 431 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 EDC3Q96F86 508 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SLC47A1Q96FL8 570 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RMND5BQ96G75 393 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FAM84AQ96KN4 292 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM56Q9BRZ2 755 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RAB17Q9H0T7 212 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TOR4AQ9NXH8 423 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DUX4Q9UBX2 424 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 KCNK7Q9Y2U2 307 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TESMINQ9Y4I5 508 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RBM7Q9Y580 266 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SMG6Q86US8 1419 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RPS6KA5O75582 802 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SUN1O94901 812 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 HDCP19113 662 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 POLR2CP19387 275 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 BCAMP50895 628 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ERV3-1Q14264 604 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 LIPNQ5VXI9 398 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 AZIN2Q96A70 460 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SPATA16Q9BXB7 569 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 MMP27Q9H306 513 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PPM1HQ9ULR3 514 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CLIP1P30622 1438 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM210A6NLX4 147 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GPAA1O43292 621 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OPN1MWP04001 364 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OPN1MW2P0DN77 364 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OPN1MW3P0DN78 364 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 XRCC1P18887 633 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CHMP24386 653 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RAD51Q06609 339 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SLC36A4Q6YBV0 504 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PTRH1Q86Y79 214 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SLC13A5Q86YT5 568 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RNF148Q8N7C7 305 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GTF2H4Q92759 462 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GJA10Q969M2 543 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 QRFPRQ96P65 431 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ABHD1Q96SE0 405 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PHOX2BQ99453 314 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM51Q9BSJ1 452 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TTYH1Q9H313 450 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GPN3Q9UHW5 284 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CACNA1HO95180 2353 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FGF18O76093 207 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ENDOD1O94919 500 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 POP4O95707 220 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GSRP00390 522 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TUBB4AP04350 444 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RETP07949 1114 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SUPT20HL2P0C7V6 817 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NID1P14543 1247 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ELF3P78545 371 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CREMQ03060 361 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RAB33AQ14088 237 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGAP11BQ3KRB8 267 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 XKR3Q5GH77 459 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF667Q5HYK9 610 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TCTE1Q5JU00 501 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF569Q5MCW4 686 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RBM44Q6ZP01 1051 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM26Q6ZUK4 368 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TRMT44Q8IYL2 757 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 BOD1L2Q8IYS8 172 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARFGAP1Q8N6T3 406 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RNF145Q96MT1 663 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 C12orf10Q9HB07 376 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARVCFO00192 962 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 BMP15O95972 392 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FAM153BP0C7A2 387 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 C7P10643 843 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PRPS2P11908 318 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms