RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ELOA2Q8IYF1 753 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MARVELD2Q8N4S9 558 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CDYL2Q8N8U2 506 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PAPD5Q8NDF8 572 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAFIPQ8WZ33 124 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DCUN1D5Q9BTE7 237 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NIF3L1Q9GZT8 377 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF350Q9GZX5 532 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARHGEF4Q9NR80 690 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CRNNQ9UBG3 495 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NDRG3Q9UGV2 375 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C2CD2Q9Y426 696 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARL5AQ9Y689 179 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GJE1A6NN92 205 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAM220BPB1ANY3 271 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 STX16O14662 325 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CNOT3O75175 753 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ATP6V1G1O75348 118 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB7AO95365 584 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PTHP01270 115 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PFKFB1P16118 471 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PSMB9P28065 219 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GSTM2P28161 218 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PTPN6P29350 595 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 AKT2P31751 481 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KIR3DL1P43629 444 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NRIP1P48552 1158 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GDI2P50395 445 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPAT3Q53EU6 434 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPR107Q5VW38 600 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SWSAP1Q6NVH7 229 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BORAQ6PGQ7 559 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GKN2Q86XP6 184 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM156Q8N614 296 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 OR52L1Q8NGH7 329 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF507Q8TCN5 953 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NANOS1Q8WY41 292 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF75CPQ92670 426 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CORO2AQ92828 525 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C16orf58Q96GQ5 468 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DUSP23Q9BVJ7 150 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TAPBPLQ9BX59 468 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MED28Q9H204 178 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PCDH12Q9NPG4 1184 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HPS4Q9NQG7 708 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ABCB10Q9NRK6 738 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PANK4Q9NVE7 773 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PCSK1NQ9UHG2 260 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 STXBP5LQ9Y2K9 1186 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ACTL7AQ9Y615 435 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SHANK2Q9UPX8 1470 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 USP6P35125 1406 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ASXL2Q76L83 1435 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NEDD8-MDP1E9PL57 170 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 VILLO15195 856 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEB4O15481 346 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SEC24AO95486 1093 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TGFB3P10600 412 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PDHBP11177 359 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ENO3P13929 434 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 VAV1P15498 845 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MYL12AP19105 171 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IL12AP29459 219 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 WEE1P30291 646 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CDH5P33151 784 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF81P51508 661 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SNRPD1P62314 119 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CARTPTQ16568 116 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 VPS26BQ4G0F5 336 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DYMQ7RTS9 669 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 OR8H3Q8N146 312 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NINJ1Q92982 152 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DHTKD1Q96HY7 919 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GJD4Q96KN9 370 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CCNL2Q96S94 520 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM79Q9BSE2 394 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAIM2Q9BWQ8 316 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 EPB41L4BQ9H329 900 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IL1RL2Q9HB29 575 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.8□□□□□ -1.963e-7■■■□□ 19
SCN1A-219ENST00000641575 C15orf41Q9Y2V0 281 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KDM6AO15550 1401 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TRAPPC8Q9Y2L5 1435 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KCNK1O00180 336 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CBX4O00257 560 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SOAT2O75908 522 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RAB4AP20338 218 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NDUFS1P28331 727 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TOP3AQ13472 1001 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SWI5Q1ZZU3 235 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM35AQ53FP2 167 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ALFQ53S48 1182 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NAPEPLDQ6IQ20 393 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ASB18Q6ZVZ8 466 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 UNC13DQ70J99 1090 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KIAA0907Q7Z7F0 614 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ANKFN1Q8N957 763 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPR156Q8NFN8 814 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PPP1R35Q8TAP8 253 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PNPT1Q8TCS8 783 aaKnown RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms