RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SPICE1Q8N0Z3 855 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SLC34A3Q8N130 599 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 Q8N7P7 452 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SLC24A4Q8NFF2 622 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 OR4N2Q8NGD1 307 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SCAMP5Q8TAC9 235 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 OTUD7AQ8TE49 926 aaPredicted RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 C2CD4CQ8TF44 421 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 HDAC7Q8WUI4 952 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MUL1Q969V5 352 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GRAMD1AQ96CP6 724 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 REXO5Q96IC2 774 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 FAR2Q96K12 515 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CCDC138Q96M89 665 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 PRPF18Q99633 342 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 MYD88Q99836 296 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 ELAC2Q9BQ52 826 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 TRIM51Q9BSJ1 452 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 RTKNQ9BST9 563 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MMTAG2Q9BU76 263 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 CRB3Q9BUF7 120 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MSTO1Q9BUK6 570 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 MCRIP2Q9BUT9 160 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 HDHD5Q9BXW7 423 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 KRTAP4-1Q9BYQ7 146 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 PABPC3Q9H361 631 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 HIPK3Q9H422 1215 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 CLK4Q9HAZ1 481 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 LRRC4Q9HBW1 653 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SEPSECSQ9HD40 501 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 NLRC4Q9NPP4 1024 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FBXO28Q9NVF7 368 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 FAM118AQ9NWS6 357 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 C2orf42Q9NWW7 574 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 GRHPRQ9UBQ7 328 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 UPB1Q9UBR1 384 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SRP68Q9UHB9 627 aaKnown RBP0.5□□□□□ -2.33
VPS35-212ENST00000640313 TAGLN3Q9UI15 199 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SIX4Q9UIU6 781 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 NFU1Q9UMS0 254 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SLC12A4Q9UP95 1085 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 OSGIN2Q9Y236 505 aa0.5□□□□□ -2.33
VPS35-212ENST00000640313 SHROOM4Q9ULL8 1493 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ATXN2Q99700 1313 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 A0A0G2JPF8 293 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCDC194A0A1B0GVG4 234 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM90A7PA6NKC0 464 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM90A22PA8MWA6 464 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM90A12PA8MX19 464 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM90A23PA8MXZ1 464 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SMIM1B2RUZ4 78 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 KDM4EB2RXH2 506 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPCL3B7ZW38 293 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 B9A039 149 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 IFNL4K9M1U5 179 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 IPO5O00410 1097 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 SH2B2O14492 632 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 TIMM23O14925 209 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PPM1GO15355 546 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 FFAR2O15552 330 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 RNMTO43148 476 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 DHX16O60231 1041 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPCL1O60812 293 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 TCEA3O75764 348 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 LARGE1O95461 756 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 IGKV3-15P01624 115 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HLA-DQA2P01906 255 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 TFRCP02786 760 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 TK1P04183 234 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 MYL1P05976 194 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CNPP09543 421 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 SETSIPP0DME0 302 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPCL4P0DMR1 293 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ACADSP16219 412 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CTPS1P17812 591 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ITGAXP20702 1163 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ZBTB25P24278 435 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PRKCHP24723 683 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CST5P28325 142 aaPredicted RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 SERPINA4P29622 427 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 DCTDP32321 178 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GRK5P34947 590 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 GJC1P36383 396 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PNPLA4P41247 253 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CCR10P46092 362 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 EFNA5P52803 228 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 MVDP53602 400 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 AP2B1P63010 937 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CYP4A11Q02928 519 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 SLC18A2Q05940 514 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 CDK18Q07002 472 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 FAM27E3Q08E93 113 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PICALMQ13492 652 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 THOC5Q13769 683 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 UBE4AQ14139 1066 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 STARD3Q14849 445 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 PUM3Q15397 648 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 OASLQ15646 514 aaKnown RBP0.49□□□□□ -2.33
VPS35-212ENST00000640313 EFNB3Q15768 340 aa0.49□□□□□ -2.33
VPS35-212ENST00000640313 ME3Q16798 604 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms