RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ATXN3P54252 364 aaPredicted RBP18.42■□□□□ 0.54
CLN3-259ENST00000637551 GRIK2Q13002 908 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 NOMO1Q15155 1222 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 CAMK1DQ8IU85 385 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 ALG3Q92685 438 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 HAUS1Q96CS2 278 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 IFT43Q96FT9 208 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 SERAC1Q96JX3 654 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 LGMNQ99538 433 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 SLC17A9Q9BYT1 436 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 FRMD8P1Q9BZ68 369 aaPredicted RBP18.42■□□□□ 0.54
CLN3-259ENST00000637551 CARD9Q9H257 536 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 NOD2Q9HC29 1040 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 RBM22Q9NW64 420 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLN3-259ENST00000637551 TRIM10Q9UDY6 481 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 PHTF1Q9UMS5 762 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 A0A1W2PR77 199 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 GOLGA6L9A6NEM1 432 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 PSMD11O00231 422 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 PLK4O00444 970 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 NEMP1O14524 444 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 CDX4O14627 284 aaPredicted RBP18.41■□□□□ 0.54
CLN3-259ENST00000637551 GJB3O75712 270 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 PIGNO95427 931 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 MAOBP27338 520 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 STPG1Q5TH74 334 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 TCEAL6Q6IPX3 200 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 ABI3BPQ7Z7G0 1075 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 NETO2Q8NC67 525 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 TCEAL3Q969E4 200 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 PPP1R2P1Q96PQ5 205 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 QKIQ96PU8 341 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-259ENST00000637551 MCCC1Q96RQ3 725 aaPredicted RBP18.41■□□□□ 0.54
CLN3-259ENST00000637551 SEMA3CQ99985 751 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 EBF2Q9HAK2 575 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 NT5MQ9NPB1 228 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 GPR27Q9NS67 375 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 GUCA1BQ9UMX6 200 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 ZFR2Q9UPR6 939 aaKnown RBP18.41■□□□□ 0.54
CLN3-259ENST00000637551 PPP2R2CQ9Y2T4 447 aa18.41■□□□□ 0.54
CLN3-259ENST00000637551 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.4■□□□□ 0.54
CLN3-259ENST00000637551 DDX3YO15523 660 aaKnown RBP18.4■□□□□ 0.54
CLN3-259ENST00000637551 FZD6O60353 706 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 PGLSO95336 258 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 CTSKP43235 329 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 C21orf59P57076 290 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 AP1B1Q10567 949 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 SGCGQ13326 291 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 STAT4Q14765 748 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 ZNF423Q2M1K9 1284 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 TEX44Q53QW1 395 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 ARMC12Q5T9G4 340 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 KYAT3Q6YP21 454 aaKnown RBP18.4■□□□□ 0.54
CLN3-259ENST00000637551 DPPA4Q7L190 304 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 ADAT2Q7Z6V5 191 aaKnown RBP18.4■□□□□ 0.54
CLN3-259ENST00000637551 ARRDC2Q8TBH0 407 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 CXorf40AQ8TE69 158 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 PCDH12Q9NPG4 1184 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 TRHDEQ9UKU6 1024 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 ANKRD6Q9Y2G4 727 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 LRRK1Q38SD2 2015 aa18.4■□□□□ 0.54
CLN3-259ENST00000637551 TM4SF5O14894 197 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 ZSCAN12O43309 604 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 OPHN1O60890 802 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 TM7SF2O76062 418 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 HLA-DQB2P05538 268 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 CYP2A6P11509 494 aaPredicted RBP18.39■□□□□ 0.53
CLN3-259ENST00000637551 ZNF30P17039 623 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 DYNLT1P63172 113 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 KLF1Q13351 362 aaPredicted RBP18.39■□□□□ 0.53
CLN3-259ENST00000637551 CCDC6Q16204 474 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 USP45Q70EL2 814 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 TADA1Q96BN2 335 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 SCRN2Q96FV2 425 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 TEKT5Q96M29 485 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 SLC6A18Q96N87 628 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 LYSMD1Q96S90 227 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 SRPK1Q96SB4 655 aaKnown RBP18.39■□□□□ 0.53
CLN3-259ENST00000637551 TDRD1Q9BXT4 1180 aaKnown RBP18.39■□□□□ 0.53
CLN3-259ENST00000637551 SLC25A51Q9H1U9 297 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 SMOC1Q9H4F8 434 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 GDF3Q9NR23 364 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 AASDHPPTQ9NRN7 309 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 ADAMTS9Q9P2N4 1935 aa18.39■□□□□ 0.53
CLN3-259ENST00000637551 ASPMQ8IZT6 3477 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 FASNP49327 2511 aaKnown RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 A6NNZ2 444 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 KCNK1O00180 336 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 TLR4O00206 839 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 PCDHGA12O60330 932 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 FTCDO95954 541 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 CPP00450 1065 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 JCHAINP01591 159 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 PYGMP11217 842 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 PECAM1P16284 738 aaPredicted RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 CSRP1P21291 193 aaKnown RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 RABIFP47224 123 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 CSNK1EP49674 416 aaKnown RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 YPEL5P62699 121 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 GSE1Q14687 1217 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms