RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PYROXD2Q8N2H3 581 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 FBXO39Q8N4B4 442 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SPOCK2Q92563 424 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 TSACCQ96A04 125 aaPredicted RBP16.57■□□□□ 0.24
CLN3-255ENST00000637100 CCDC74AQ96AQ1 378 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 HMCESQ96FZ2 354 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 GFM1Q96RP9 751 aaKnown RBP16.57■□□□□ 0.24
CLN3-255ENST00000637100 C11orf70Q9BRQ4 267 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-255ENST00000637100 WRAP53Q9BUR4 548 aaKnown RBP16.57■□□□□ 0.24
CLN3-255ENST00000637100 CLSTN2Q9H4D0 955 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SUV39H2Q9H5I1 410 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 LRRC19Q9H756 370 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 LRRK1Q38SD2 2015 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SCN8AQ9UQD0 1980 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 FAM170AA1A519 330 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 BUB1BO60566 1050 aaPredicted RBP16.56■□□□□ 0.24
CLN3-255ENST00000637100 GFPT2O94808 682 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 ITGB2P05107 769 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 EPHB2P29323 1055 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 HTR7P34969 479 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 MMP12P39900 470 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 INHBCP55103 352 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 INPP5AQ14642 412 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 PPP1R15BQ5SWA1 713 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 KCTD16Q68DU8 428 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 BRAT1Q6PJG6 821 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 NYAP1Q6ZVC0 841 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 ZSWIM9Q86XI8 627 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 DNAAF5Q86Y56 855 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 HID1Q8IV36 788 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 TMEM159Q96B96 161 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 ECHDC3Q96DC8 303 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 TMEM74Q96NL1 305 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 TUBGCP5Q96RT8 1024 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 LRRN3Q9H3W5 708 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 PCDH12Q9NPG4 1184 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 FZD10Q9ULW2 581 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 GPR34Q9UPC5 381 aa16.56■□□□□ 0.24
CLN3-255ENST00000637100 UBR5O95071 2799 aaPredicted RBP16.56■□□□□ 0.24
CLN3-255ENST00000637100 TNFRSF10CO14798 259 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 EPHB6O15197 1021 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 GLB1P16278 677 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 GPD1P21695 349 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 HTR1BP28222 390 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 LIG3P49916 1009 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 ZNF143P52747 638 aaPredicted RBP16.55■□□□□ 0.24
CLN3-255ENST00000637100 KIAA1024LP59773 190 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 CLEC16AQ2KHT3 1053 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 HSP90AA4PQ58FG1 418 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 CERCAMQ5T4B2 595 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 CDKAL1Q5VV42 579 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 MON1BQ7L1V2 547 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 C17orf82Q86X59 251 aaPredicted RBP16.55■□□□□ 0.24
CLN3-255ENST00000637100 DTX1Q86Y01 620 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 ATL2Q8NHH9 583 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 WDR92Q96MX6 357 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 SEMA3CQ99985 751 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 STRADBQ9C0K7 418 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 CLMPQ9H6B4 373 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 ADAM22Q9P0K1 906 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 GULP1Q9UBP9 304 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 DACH1Q9UI36 760 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 SIK3Q9Y2K2 1263 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 COQ6Q9Y2Z9 468 aa16.55■□□□□ 0.24
CLN3-255ENST00000637100 SPTA1P02549 2419 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.54■□□□□ 0.24
CLN3-255ENST00000637100 FGF10O15520 208 aaPredicted RBP16.54■□□□□ 0.24
CLN3-255ENST00000637100 PRAMEF11O60813 436 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 WISP1O95388 367 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 RPLP0P05388 317 aaKnown RBP16.54■□□□□ 0.24
CLN3-255ENST00000637100 CALB1P05937 261 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 LIPCP11150 499 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 CTSEP14091 401 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 GM2AP17900 193 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 ITGB6P18564 788 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 NDST2P52849 883 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 RALGDSQ12967 914 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 AFMIDQ63HM1 303 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 ENPP7Q6UWV6 458 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 PHLDB2Q86SQ0 1253 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 SLITRK4Q8IW52 837 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 NETO2Q8NC67 525 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 CATSPERBQ9H7T0 1116 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 STARD5Q9NSY2 213 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 KLQ9UEF7 1012 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 ATP8A1Q9Y2Q0 1164 aa16.54■□□□□ 0.24
CLN3-255ENST00000637100 TLN1Q9Y490 2541 aaKnown RBP16.54■□□□□ 0.24
CLN3-255ENST00000637100 CCP110O43303 1012 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 NUDT21O43809 227 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 PIGNO95427 931 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 TNFP01375 233 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 NSFP46459 744 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 KLK7P49862 253 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 POLR2FP61218 127 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 NSUN2Q08J23 767 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-255ENST00000637100 HLTFQ14527 1009 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-255ENST00000637100 NR1D2Q14995 579 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 TGIF1Q15583 401 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 ZSCAN23Q3MJ62 389 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms