RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KDELC2Q7Z4H8 507 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 ZNF438Q7Z4V0 828 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 PPM1KQ8N3J5 372 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 GUF1Q8N442 669 aaKnown RBP14.66□□□□□ -0.06
CLN3-249ENST00000636685 ATL2Q8NHH9 583 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 STK32AQ8WU08 396 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 RTP4Q96DX8 246 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 TCTN2Q96GX1 697 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 CTRCQ99895 268 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 INTS2Q9H0H0 1204 aaKnown RBP14.66□□□□□ -0.06
CLN3-249ENST00000636685 FGF22Q9HCT0 170 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 DONSONQ9NYP3 566 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 TMEM9Q9P0T7 183 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 TLK1Q9UKI8 766 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 MAP4K5Q9Y4K4 846 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 APCP25054 2843 aa14.66□□□□□ -0.06
CLN3-249ENST00000636685 ILVBLA1L0T0 632 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 TMEM202A6NGA9 273 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 B4E171 279 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 CETN3O15182 167 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 PCCBP05166 539 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 THRAP10827 490 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 TSPAN7P41732 249 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 ABHD18Q0P651 414 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 MTA1Q13330 715 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 NR1D2Q14995 579 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 CLPPQ16740 277 aaPredicted RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 C8orf34Q49A92 452 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 CRTC2Q53ET0 693 aaPredicted RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 PLPP6Q8IY26 295 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 BMPERQ8N8U9 685 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 OR4D9Q8NGE8 314 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 PDCD6IPQ8WUM4 868 aaKnown RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 ISG20Q96AZ6 181 aaKnown RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 NT5C1BQ96P26 610 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 TKTL2Q9H0I9 626 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 SPATS2LQ9NUQ6 558 aaKnown RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 ERRFI1Q9UJM3 462 aaPredicted RBP14.65□□□□□ -0.06
CLN3-249ENST00000636685 CELSR1Q9NYQ6 3014 aa14.65□□□□□ -0.06
CLN3-249ENST00000636685 RFPL1O75677 317 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 RHOBTB3O94955 611 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 LDLRP01130 860 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 FURINP09958 794 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 F8A1P23610 371 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 CSF2RBP32927 897 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 ME1P48163 572 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 RAB15P59190 212 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 DPYDQ12882 1025 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 MYLK3Q32MK0 819 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 ARTNQ5T4W7 220 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 ATXN7L2Q5T6C5 722 aaPredicted RBP14.64□□□□□ -0.07
CLN3-249ENST00000636685 OTUD1Q5VV17 481 aaPredicted RBP14.64□□□□□ -0.07
CLN3-249ENST00000636685 GDPD4Q6W3E5 623 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 RRAGAQ7L523 313 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 C17orf82Q86X59 251 aaPredicted RBP14.64□□□□□ -0.07
CLN3-249ENST00000636685 PLA2G15Q8NCC3 412 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 OR56A4Q8NGH8 313 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 PRR7Q8TB68 274 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 OSBPL1AQ9BXW6 950 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 PIGVQ9NUD9 493 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 ZNF212Q9UDV6 495 aa14.64□□□□□ -0.07
CLN3-249ENST00000636685 AKAP9Q99996 3911 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 TCP11X1B4DZS4 312 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 HSF2BPO75031 334 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 POP4O95707 220 aaKnown RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 GSRP00390 522 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 GLI1P08151 1106 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 PRF1P14222 555 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 ACVRL1P37023 503 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 SNRPD1P62314 119 aaKnown RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 GNA12Q03113 381 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 PDCLQ13371 301 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 FOXD4L6Q3SYB3 417 aaPredicted RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 NADK2Q4G0N4 442 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 TMEM52BQ4KMG9 183 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 PRR30Q53SZ7 412 aaPredicted RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 LRRC31Q6UY01 552 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 FOXD4L3Q6VB84 417 aaPredicted RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 ZNF783Q6ZMS7 281 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 LEKR1Q6ZMV7 388 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 TMEM135Q86UB9 458 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 ARHGEF19Q8IW93 802 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 OR2AP1Q8NGE2 309 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 KIAA1524Q8TCG1 905 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 ZDHHC1Q8WTX9 485 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 FUBP1Q96AE4 644 aaKnown RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 TEFMQ96QE5 360 aaKnown RBP14.63□□□□□ -0.07
CLN3-249ENST00000636685 CYP4F12Q9HCS2 524 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 ARHGEF38Q9NXL2 777 aa14.63□□□□□ -0.07
CLN3-249ENST00000636685 MED13LQ71F56 2210 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 IGLV3-10A0A075B6K4 115 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 SRGAP2O75044 1071 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 STK17BO94768 372 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 ECEL1O95672 775 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 FGF1P05230 155 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 TFE3P19532 575 aaPredicted RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 MTM1Q13496 603 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 ERV3-1Q14264 604 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 POLD3Q15054 466 aaPredicted RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 EFHC1Q5JVL4 640 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms