RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 C6P13671 934 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 TSHRP16473 764 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 SERPINA4P29622 427 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 TMPRSS3P57727 454 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 NSUN2Q08J23 767 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-241ENST00000635861 MAMLD1Q13495 774 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 NFATC4Q14934 902 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 ERMARDQ5T6L9 678 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 ARL10Q8N8L6 244 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 OR6C4Q8NGE1 309 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 SLC39A7Q92504 469 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 CCDC97Q96F63 343 aaPredicted RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 EXOC2Q96KP1 924 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 NAT10Q9H0A0 1025 aaKnown RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 TCEAL2Q9H3H9 227 aaPredicted RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 ATP13A3Q9H7F0 1226 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 PCDH12Q9NPG4 1184 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 PNMA8BQ9ULN7 279 aaPredicted RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 DOLKQ9UPQ8 538 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 ENTPD2Q9Y5L3 495 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 COL6A6A6NMZ7 2263 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 EEF2KO00418 725 aaKnown RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 INSIG1O15503 277 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 RNF8O76064 485 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 GZMAP12544 262 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 PSMA2P25787 234 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 RBMS1P29558 406 aaKnown RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 MMP12P39900 470 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 POLR2LP62875 67 aaKnown RBP18.57■□□□□ 0.56
CLN3-241ENST00000635861 OGDHQ02218 1023 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 C19orf57Q0VDD7 668 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 MTM1Q13496 603 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 WSCD2Q2TBF2 565 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 CCDC183Q5T5S1 534 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 GKN2Q86XP6 184 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 KCNE4Q8WWG9 221 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 APOOQ9BUR5 198 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 EDEM3Q9BZQ6 932 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 CLPBQ9H078 707 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 PADI4Q9UM07 663 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 SATB2Q9UPW6 733 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 ATP8A1Q9Y2Q0 1164 aa18.57■□□□□ 0.56
CLN3-241ENST00000635861 CAPN8A6NHC0 703 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 J3KR12 359 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 MUSKO15146 869 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 CTSEP14091 401 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 ITIH2P19823 946 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 HCAR3P49019 387 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 PAPOLAP51003 745 aaKnown RBP18.56■□□□□ 0.56
CLN3-241ENST00000635861 C1orf61Q13536 156 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 C3orf38Q5JPI3 329 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 PERM1Q5SV97 790 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 AFMIDQ63HM1 303 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 SRLQ86TD4 932 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 ECHDC3Q96DC8 303 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 SLC46A1Q96NT5 459 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 BPIFA3Q9BQP9 254 aa18.56■□□□□ 0.56
CLN3-241ENST00000635861 DHX35Q9H5Z1 703 aaKnown RBP18.56■□□□□ 0.56
CLN3-241ENST00000635861 TMX2-CTNND1H3BSU7 103 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 ERVH48-1M5A8F1 160 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 DAPK3O43293 454 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 PALMO75781 387 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 LIG3P49916 1009 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 RENBPP51606 427 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 CXADRP78310 365 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SKOR1P84550 965 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 RHDQ02161 417 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SPIDRQ14159 915 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SKOR2Q2VWA4 1001 aaPredicted RBP18.55■□□□□ 0.56
CLN3-241ENST00000635861 TMCO4Q5TGY1 634 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 RFX8Q6ZV50 586 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 ARL14Q8N4G2 192 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 LZTR1Q8N653 840 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 WDR36Q8NI36 951 aaKnown RBP18.55■□□□□ 0.56
CLN3-241ENST00000635861 SPOCK2Q92563 424 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 WBP1Q96G27 269 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 ATXN7L3BQ96GX2 97 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 WDR92Q96MX6 357 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 CCDC3Q9BQI4 270 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SNRNP25Q9BV90 132 aaKnown RBP18.55■□□□□ 0.56
CLN3-241ENST00000635861 CINPQ9BW66 212 aaPredicted RBP18.55■□□□□ 0.56
CLN3-241ENST00000635861 SLC39A8Q9C0K1 460 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SP110Q9HB58 689 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 TAS2R14Q9NYV8 317 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 KLQ9UEF7 1012 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SSUH2Q9Y2M2 353 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 COQ6Q9Y2Z9 468 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 DGKBQ9Y6T7 804 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 SCINQ9Y6U3 715 aa18.55■□□□□ 0.56
CLN3-241ENST00000635861 CCDC187A0A096LP49 1063 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 A0A1W2PQ67 120 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 TMEM191CA6NGB0 347 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 NTN3O00634 580 aaPredicted RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 PRPSAP2O60256 369 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 BUB1BO60566 1050 aaPredicted RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 HOXC4P09017 264 aaPredicted RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 KELP23276 732 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 PRKCIP41743 596 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 SRP54P61011 504 aaKnown RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 BCL2L1Q07817 233 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms