RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C1QTNF2Q9BXJ5 285 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 OSBPL8Q9BZF1 889 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 PCDH12Q9NPG4 1184 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 GGT7Q9UJ14 662 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 ATP8A1Q9Y2Q0 1164 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 CAPN6Q9Y6Q1 641 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 A0A1W2PR77 199 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 RIOK3O14730 519 aaKnown RBP20.86■□□□□ 0.93
CLN3-240ENST00000631023 WNT9AO14904 365 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 SPINT1O43278 529 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 PAK4O96013 591 aaPredicted RBP20.86■□□□□ 0.93
CLN3-240ENST00000631023 ADCY2Q08462 1091 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 TMEM52BQ4KMG9 183 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 ZSWIM9Q86XI8 627 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 ALG3Q92685 438 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 GAREM1Q9H706 876 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 DNAAF2Q9NVR5 837 aaKnown RBP20.86■□□□□ 0.93
CLN3-240ENST00000631023 SEPT10Q9P0V9 454 aa20.86■□□□□ 0.93
CLN3-240ENST00000631023 APOC4-APOC2K7ER74 178 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 TLR4O00206 839 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 MTSS1O43312 755 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 DFNA5O60443 496 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 TM7SF2O76062 418 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 TJP3O95049 919 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 APOC2P02655 101 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 WNT1P04628 370 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 HLA-DQB2P05538 268 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 PTMAP06454 111 aaKnown RBP20.85■□□□□ 0.93
CLN3-240ENST00000631023 PECAM1P16284 738 aaPredicted RBP20.85■□□□□ 0.93
CLN3-240ENST00000631023 CA4P22748 312 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 FAM193AP78312 1265 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 BNC1Q01954 994 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 HLA-BQ31612 363 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 ARMC12Q5T9G4 340 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 LAYNQ6UX15 382 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 TMEM145Q8NBT3 493 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 KLHDC7BQ96G42 594 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 NSMCE3Q96MG7 304 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 WRAP53Q9BUR4 548 aaKnown RBP20.85■□□□□ 0.93
CLN3-240ENST00000631023 LZTFL1Q9NQ48 299 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 PHTF1Q9UMS5 762 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 PACSIN2Q9UNF0 486 aaPredicted RBP20.85■□□□□ 0.93
CLN3-240ENST00000631023 PCDHB9Q9Y5E1 797 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 SNX11Q9Y5W9 270 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 HS3ST3A1Q9Y663 406 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 MMP20O60882 483 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 PYGMP11217 842 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 ITIH2P19823 946 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 DSC2Q02487 901 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 SLC14A1Q13336 389 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 NDUFAF2Q8N183 169 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-240ENST00000631023 HES6Q96HZ4 224 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 LENG8Q96PV6 779 aaPredicted RBP20.85■□□□□ 0.93
CLN3-240ENST00000631023 ALS2CR12Q96Q35 445 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 MYOCQ99972 504 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 RAI2Q9Y5P3 530 aa20.85■□□□□ 0.93
CLN3-240ENST00000631023 HACD1B0YJ81 288 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 PGLSO95336 258 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 CPP00450 1065 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 MMP12P39900 470 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 CTSKP43235 329 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 TRAF2Q12933 501 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 ZBTB17Q13105 803 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 XRCC4Q13426 336 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 FGL2Q14314 439 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 PRKD1Q15139 912 aaPredicted RBP20.84■□□□□ 0.93
CLN3-240ENST00000631023 ZC3H18Q86VM9 953 aaKnown RBP20.84■□□□□ 0.93
CLN3-240ENST00000631023 OR2I1PQ8NGU4 316 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 HAUS1Q96CS2 278 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 FERMT1Q9BQL6 677 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 FZD3Q9NPG1 666 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 GDF3Q9NR23 364 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 PPP2R2CQ9Y2T4 447 aa20.84■□□□□ 0.93
CLN3-240ENST00000631023 DCHS1Q96JQ0 3298 aa20.83■□□□□ 0.93
CLN3-240ENST00000631023 CFAP69A5D8W1 941 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 ZNF883P0CG24 379 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 TEX44Q53QW1 395 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 CNTD1Q8N815 330 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 DENND6BQ8NEG7 585 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 AGAP3Q96P47 875 aa20.83■□□□□ 0.92
CLN3-240ENST00000631023 GOLGA6L9A6NEM1 432 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 FPGTO14772 594 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 TM4SF5O14894 197 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 DDX3YO15523 660 aaKnown RBP20.82■□□□□ 0.92
CLN3-240ENST00000631023 LZTS3O60299 673 aaPredicted RBP20.82■□□□□ 0.92
CLN3-240ENST00000631023 PRKCGP05129 697 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 CYP2A6P11509 494 aaPredicted RBP20.82■□□□□ 0.92
CLN3-240ENST00000631023 LIG3P49916 1009 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 B4GALNT4Q76KP1 1039 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 DPPA4Q7L190 304 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 DCP2Q8IU60 420 aaKnown RBP20.82■□□□□ 0.92
CLN3-240ENST00000631023 ARRDC2Q8TBH0 407 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 VAT1Q99536 393 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 ERVMER34-1Q9H9K5 563 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 CA5BQ9Y2D0 317 aa20.82■□□□□ 0.92
CLN3-240ENST00000631023 A6NNZ2 444 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 H7C0C1 242 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 THEGLP0DJG4 465 aa20.81■□□□□ 0.92
CLN3-240ENST00000631023 ATP5OP48047 213 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms