RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 GATAD2AQ86YP4 633 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 FNDC8Q8TC99 324 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 KAT5Q92993 513 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ITCHQ96J02 903 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ARMC7Q9H6L4 198 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 DSEQ9UL01 958 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 MKLN1Q9UL63 735 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 MPSTP25325 297 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 MPP1Q00013 466 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PTSQ03393 145 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SKIV2LQ15477 1246 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 PFKFB4Q16877 469 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 MFSD14CQ5VZR4 134 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 DNAJC14Q6Y2X3 702 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 FAM92BQ6ZTR7 304 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 TNS4Q8IZW8 715 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 STK40Q8N2I9 435 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 IPCEF1Q8WWN9 437 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 NELL1Q92832 810 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 IRF2BPLQ9H1B7 796 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SEMA4BQ9NPR2 832 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 PIH1D1Q9NWS0 290 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 XPR1Q9UBH6 696 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 OPTCQ9UBM4 332 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ADGRE2Q9UHX3 823 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 MOSPD1Q9UJG1 213 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PSME2Q9UL46 239 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CCDC88AQ3V6T2 1871 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 NR2F6P10588 404 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 TMPRSS11AQ6ZMR5 421 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 TNFRSF25Q93038 417 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SLC38A2Q96QD8 506 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PDCD10Q9BUL8 212 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 RPLP0P05388 317 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 ODC1P11926 461 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 NFKB1P19838 968 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 NDST1P52848 882 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 WDR4P57081 412 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 GCNT7Q6ZNI0 430 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CPSF7Q8N684 471 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 CEP41Q9BYV8 373 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 WDR55Q9H6Y2 383 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 CAB39LQ9H9S4 337 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ZNF112Q9UJU3 913 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 HMBSP08397 361 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ZNF7P17097 686 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 PPIBP23284 216 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 MSX2P35548 267 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 NOMO1Q15155 1222 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PLEKHG6Q3KR16 790 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ZNF484Q5JVG2 852 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 TMEM53Q6P2H8 277 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CXXC5Q7LFL8 322 aaKnown RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 SYT12Q8IV01 421 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ADGRF2Q8IZF7 708 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PTGFRNQ9P2B2 879 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PHF24Q9UPV7 400 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 RRN3P2A6NIE6 340 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 AQP12BA6NM10 295 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 KLF11O14901 512 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 MPZL2O60487 215 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 IL2P60568 153 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ZNF177Q13360 481 aaPredicted RBP8.95□□□□□ -0.98
VCL-206ENST00000623461 ATP13A4Q4VNC1 1196 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 AQP12AQ8IXF9 295 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 A6NHS1 94 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CCRL2O00421 344 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 GNB5O14775 395 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SNAPC5O75971 98 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 TFEBP19484 476 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SLC11A2P49281 568 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 HKDC1Q2TB90 917 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 XKRXQ6PP77 449 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CUZD1Q86UP6 607 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 GALNT6Q8NCL4 622 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CPT1BQ92523 772 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PANX3Q96QZ0 392 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 SLC22A4Q9H015 551 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 RHOJQ9H4E5 214 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ASB7Q9H672 318 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 CATSPERZQ9NTU4 200 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 PPM1HQ9ULR3 514 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ATRNO75882 1429 aa8.95□□□□□ -0.98
VCL-206ENST00000623461 ILVBLA1L0T0 632 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 KCNU1A8MYU2 1149 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 F5H5T6 163 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 PSMA1P25786 263 aaKnown RBP8.94□□□□□ -0.98
VCL-206ENST00000623461 LHX1P48742 406 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 YWHAZP63104 245 aaKnown RBP8.94□□□□□ -0.98
VCL-206ENST00000623461 CARTPTQ16568 116 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 APOBEC3FQ8IUX4 373 aaKnown RBP8.94□□□□□ -0.98
VCL-206ENST00000623461 OR2T12Q8NG77 320 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 SNX6Q9UNH7 406 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 SH3PXD2BA1X283 911 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 H0YGN5 161 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 ZW10O43264 779 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 IFNA16P05015 189 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 PGRP06401 933 aa8.94□□□□□ -0.98
VCL-206ENST00000623461 AOC1P19801 751 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms