RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 VOPP1Q96AW1 172 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 WRAP53Q9BUR4 548 aaKnown RBP12.02□□□□□ -0.49
UPF3B-204ENST00000619445 CINPQ9BW66 212 aaPredicted RBP12.02□□□□□ -0.49
UPF3B-204ENST00000619445 MAGEB5Q9BZ81 275 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 EDEM3Q9BZQ6 932 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 DHX35Q9H5Z1 703 aaKnown RBP12.02□□□□□ -0.49
UPF3B-204ENST00000619445 SP110Q9HB58 689 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PDFQ9HBH1 243 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 MRPL47Q9HD33 250 aaKnown RBP12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PCDH12Q9NPG4 1184 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PADI4Q9UM07 663 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 PCDHB1Q9Y5F3 818 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 LRRK1Q38SD2 2015 aa12.02□□□□□ -0.49
UPF3B-204ENST00000619445 KALRNO60229 2985 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 LOC400499M0QZD8 3231 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 ANKRD36A6QL64 1941 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SMG1Q96Q15 3661 aaKnown RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 A0A1W2PQC6 194 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 PDE2AO00408 941 aaPredicted RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 MUSKO15146 869 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 MPOP05164 745 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 HOXC4P09017 264 aaPredicted RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 C6P13671 934 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 TSHRP16473 764 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 TGM2P21980 687 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 HSPA9P38646 679 aaKnown RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 AP1S1P61966 158 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 RHDQ02161 417 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 BCL2L1Q07817 233 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 IL10RBQ08334 325 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 C19orf57Q0VDD7 668 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 CCDC173Q0VFZ6 552 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 EIF3IQ13347 325 aaKnown RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SPIDRQ14159 915 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 NCAPHQ15003 741 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 IRF4Q15306 451 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 RFX8Q6ZV50 586 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 APTXQ7Z2E3 356 aaKnown RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SRLQ86TD4 932 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SLC35F3Q8IY50 421 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 BBS5Q8N3I7 341 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 AOPEPQ8N6M6 819 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 WDR36Q8NI36 951 aaKnown RBP12.01□□□□□ -0.49
UPF3B-204ENST00000619445 KCNE4Q8WWG9 221 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SPOCK2Q92563 424 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 WBP1Q96G27 269 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 WDR92Q96MX6 357 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 ZNF599Q96NL3 588 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SYT11Q9BT88 431 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 KLC2Q9H0B6 622 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 ZWILCHQ9H900 591 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 AIPL1Q9NZN9 384 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 SEPT3Q9UH03 358 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 DGKBQ9Y6T7 804 aa12.01□□□□□ -0.49
UPF3B-204ENST00000619445 COL6A6A6NMZ7 2263 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 UNC13CQ8NB66 2214 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 AHCTF1Q8WYP5 2266 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 CCDC187A0A096LP49 1063 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 TMEM191CA6NGB0 347 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 CACNB4O00305 520 aaPredicted RBP12□□□□□ -0.49
UPF3B-204ENST00000619445 TNFRSF10CO14798 259 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 YY2O15391 372 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 GCATO75600 419 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 PIGNO95427 931 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 TNFP01375 233 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 PCK1P35558 622 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 PRKCIP41743 596 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 LIG3P49916 1009 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 PAPOLAP51003 745 aaKnown RBP12□□□□□ -0.49
UPF3B-204ENST00000619445 TYRO3Q06418 890 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 ASIC2Q16515 512 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 TSR1Q2NL82 804 aaKnown RBP12□□□□□ -0.49
UPF3B-204ENST00000619445 WSCD2Q2TBF2 565 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 RALGPS1Q5JS13 557 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 LRRC73Q5JTD7 316 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 TPRG1LQ5T0D9 272 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 AFMIDQ63HM1 303 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 HID1Q8IV36 788 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 RBFAQ8N0V3 343 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 SLC39A7Q92504 469 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 ECHDC3Q96DC8 303 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 EXOC2Q96KP1 924 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 SLC46A1Q96NT5 459 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 APOOQ9BUR5 198 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 STRADBQ9C0K7 418 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 ASCL3Q9NQ33 180 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 MBNL1Q9NR56 388 aaKnown RBP12□□□□□ -0.49
UPF3B-204ENST00000619445 KLQ9UEF7 1012 aa12□□□□□ -0.49
UPF3B-204ENST00000619445 H3BRJ5 948 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 J3KR12 359 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ERVH48-1M5A8F1 160 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 INSIG1O15503 277 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ZW10O43264 779 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 SOCS5O75159 536 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 FTLP02792 175 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ELFN1P0C7U0 828 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 KRT10P13645 584 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ERCC2P18074 760 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ARL4AP40617 200 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms