RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CYBRD1Q53TN4 286 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SH3PXD2AQ5TCZ1 1133 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ARHGEF16Q5VV41 709 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 PIWIL4Q7Z3Z4 852 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 CTU1Q7Z7A3 348 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 PIAS4Q8N2W9 510 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 CALML6Q8TD86 181 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SYTL5Q8TDW5 730 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 STYXQ8WUJ0 223 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SNX19Q92543 992 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SNRNP25Q9BV90 132 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 HERC2P3Q9BVR0 1158 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 RHOBTB2Q9BYZ6 727 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MUC3BQ9H195 1237 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MRM3Q9HC36 420 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 CPNE5Q9HCH3 593 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SACM1LQ9NTJ5 587 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 THG1LQ9NWX6 298 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 OAZ3Q9UMX2 235 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MTF2Q9Y483 593 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 BRCA2P51587 3418 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 TK2O00142 265 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MICAL2O94851 1124 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 JUNP05412 331 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MYL3P08590 195 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GSTM2P28161 218 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 LRPAP1P30533 357 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SERPINB1P30740 379 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GMPRP36959 345 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 TPTEP56180 551 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GBE1Q04446 702 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 PTPN11Q06124 597 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SELENBP1Q13228 472 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 SF3B4Q15427 424 aaKnown RBP eCLIP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MAPRE1Q15691 268 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 HSDL1Q3SXM5 330 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 TIGD2Q4W5G0 525 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 IQSEC1Q6DN90 963 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GTF2IRD2BQ6EKJ0 949 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 LCN8Q6JVE9 175 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 XRRA1Q6P2D8 792 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ZPBP2Q6X784 338 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GTF2IRD2Q86UP8 949 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ZBTB46Q86UZ6 589 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 DDIASQ8IXT1 998 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 OFCC1Q8IZS5 231 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 LSMEM2Q8N112 164 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 COLGALT1Q8NBJ5 622 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 BPIFB6Q8NFQ5 453 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 TRIB2Q92519 343 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 ATXN7L3BQ96GX2 97 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MYRFLQ96LU7 910 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 HOPXQ9BPY8 73 aaPredicted RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 MUC13Q9H3R2 512 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 TMEM134Q9H6X4 195 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 NGRNQ9NPE2 291 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 INTS10Q9NVR2 710 aaKnown RBP10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GPATCH2LQ9NWQ4 482 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 NSMCE4AQ9NXX6 385 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 GJD2Q9UKL4 321 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 CASP8AP2Q9UKL3 1982 aa10.88□□□□□ -0.67
UPF3A-212ENST00000619079 M0QX08 132 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 EI24O14681 340 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 SLC22A1O15245 554 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TNNC2P02585 160 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 S100BP04271 92 aaPredicted RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 MYCLP12524 364 aaPredicted RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TCEA1P23193 301 aaKnown RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 SDC4P31431 198 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 GRM5P41594 1212 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 GPD2P43304 727 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 SERPINB10P48595 397 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 RAD23AP54725 363 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 MLLT10P55197 1068 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 PRKCEQ02156 737 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 CBX2Q14781 532 aaPredicted RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 RBM48Q5RL73 367 aaKnown RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 FAM182AQ5T1J6 154 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 BSPRYQ5W0U4 402 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 AKAP14Q86UN6 197 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 PIK3C3Q8NEB9 887 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TRPV3Q8NET8 790 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 USP33Q8TEY7 942 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 TXNDC15Q96J42 360 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 SCYL1Q96KG9 808 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 YME1L1Q96TA2 773 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 XYLT2Q9H1B5 865 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 GDAP2Q9NXN4 497 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ST14Q9Y5Y6 855 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ANKRD34BA5PLL1 514 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 CENPBD1B2RD01 187 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ACOX3O15254 700 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 NUAK1O60285 661 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 GPC4O75487 556 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 FARP2O94887 1054 aaPredicted RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 IL18RAPO95256 599 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 KCNH1O95259 989 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 PARNO95453 639 aaKnown RBP10.87□□□□□ -0.67
UPF3A-212ENST00000619079 ALBP02768 609 aa10.87□□□□□ -0.67
UPF3A-212ENST00000619079 HSD17B1P14061 328 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms