RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 POM121BA6NF01 834 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 LRRC72A6NJI9 287 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 H7C0C1 242 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 RIOK3O14730 519 aaKnown RBP13.58□□□□□ -0.23
LINC00540-202ENST00000616974 HTRA2O43464 458 aaPredicted RBP13.58□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF806P0C7X5 589 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 PIRTP0C851 137 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 RBP3P10745 1247 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 NFKB1P19838 968 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 MAPK8P45983 427 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 ATP5OP48047 213 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 RENBPP51606 427 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 FAM193AP78312 1265 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 SKOR1P84550 965 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 RPS6KA1Q15418 735 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 SYCP2LQ5T4T6 812 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 CCDC181Q5TID7 509 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 PIH1D2Q8WWB5 315 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 OXNAD1Q96HP4 312 aaPredicted RBP13.58□□□□□ -0.23
LINC00540-202ENST00000616974 PPP1R16AQ96I34 528 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 LOXL4Q96JB6 756 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 POLR1EQ9GZS1 481 aaKnown RBP13.58□□□□□ -0.23
LINC00540-202ENST00000616974 USP29Q9HBJ7 922 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 LRP4O75096 1905 aa13.58□□□□□ -0.23
LINC00540-202ENST00000616974 RP1P56715 2156 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 NPIPB15A6NHN6 443 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 UPK3BL1B0FP48 263 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 UPK3BL2E5RIL1 263 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 CDX4O14627 284 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 PPP1R12AO14974 1030 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 ZNF185O15231 689 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 BCAT2O15382 392 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 FZD6O60353 706 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 ZFXP17010 805 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 SERPINA4P29622 427 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 MMP12P39900 470 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 EIF3EP60228 445 aaKnown RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 COPS2P61201 443 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 GALNT3Q14435 633 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 CSRP2Q16527 193 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 PCSK7Q16549 785 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 TEX44Q53QW1 395 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 KCTD16Q68DU8 428 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 TIGD7Q6NT04 549 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 HORMAD1Q86X24 394 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 CCDC110Q8TBZ0 833 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 COG1Q8WTW3 980 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 HTR3CQ8WXA8 447 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 FOXJ1Q92949 421 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 SERAC1Q96JX3 654 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 KLF6Q99612 283 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 TMEM121Q9BTD3 319 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 TDRD1Q9BXT4 1180 aaKnown RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 MBNL1Q9NR56 388 aaKnown RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 B4GALT6Q9UBX8 382 aa13.58□□□□□ -0.24
LINC00540-202ENST00000616974 PNMA8BQ9ULN7 279 aaPredicted RBP13.58□□□□□ -0.24
LINC00540-202ENST00000616974 KNTC1P50748 2209 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.57□□□□□ -0.24
LINC00540-202ENST00000616974 NEMP1O14524 444 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 ETS1P14921 441 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 ENGP17813 658 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 CD27P26842 260 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 CHRNA4P43681 627 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 NR2C2P49116 596 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 AP1S1P61966 158 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 RAD51Q06609 339 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 CCDC173Q0VFZ6 552 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 GRIK2Q13002 908 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SNX1Q13596 522 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SLC45A4Q5BKX6 768 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SPDYCQ5MJ68 293 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 DENND2CQ68D51 928 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SLC13A5Q86YT5 568 aaPredicted RBP13.57□□□□□ -0.24
LINC00540-202ENST00000616974 LRRC49Q8IUZ0 686 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 TXLNBQ8N3L3 684 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 TRIM58Q8NG06 486 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 NSMCE1Q8WV22 266 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 LRIG1Q96JA1 1093 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 CALR3Q96L12 384 aaKnown RBP13.57□□□□□ -0.24
LINC00540-202ENST00000616974 TEKT5Q96M29 485 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 ALS2CR12Q96Q35 445 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 OSBPL1AQ9BXW6 950 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 DKK3Q9UBP4 350 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 PCDHGA5Q9Y5G8 931 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 CFAP47Q6ZTR5 3102 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 A0A1W2PR77 199 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 KCNN4O15554 427 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SLC7A4O43246 635 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 PGLSO95336 258 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 LIG3P49916 1009 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 KIF19Q2TAC6 998 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 GCNT7Q6ZNI0 430 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 C11orf74Q86VG3 221 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 TRIM69Q86WT6 500 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 SLC22A18ASQ8N1D0 253 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 FAM71DQ8N9W8 422 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 TMEM145Q8NBT3 493 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 FATE1Q969F0 183 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 GTPBP2Q9BX10 602 aaKnown RBP13.57□□□□□ -0.24
LINC00540-202ENST00000616974 VPS45Q9NRW7 570 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms