RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CCNHP51946 323 aaPredicted RBP14.36□□□□□ -0.11
USP39-220ENST00000613444 GYS2P54840 703 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 NR1H3Q13133 447 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 TMED2Q15363 201 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 CNGA3Q16281 694 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 CARD16Q5EG05 197 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 TSTD2Q5T7W7 516 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 EMC10Q5UCC4 262 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 Q6ZVU0 165 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 SLC26A11Q86WA9 606 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 CTAGE3PQ8IX95 158 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 TERB1Q8NA31 727 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 LPCAT1Q8NF37 534 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 BRSK1Q8TDC3 778 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PIH1D2Q8WWB5 315 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 ZNF180Q9UJW8 692 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 KCTD3Q9Y597 815 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PCDHB9Q9Y5E1 797 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 PSAT1Q9Y617 370 aa14.36□□□□□ -0.11
USP39-220ENST00000613444 WASH3PC4AMC7 463 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 ATP5BP06576 529 aaKnown RBP14.35□□□□□ -0.11
USP39-220ENST00000613444 CREB1P16220 341 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 KCNA5P22460 613 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 SLC8A1P32418 973 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 EIF2DP41214 584 aaKnown RBP14.35□□□□□ -0.11
USP39-220ENST00000613444 KDSRQ06136 332 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 SEPT6Q14141 434 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 PTPRRQ15256 657 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 SMAD1Q15797 465 aaKnown RBP14.35□□□□□ -0.11
USP39-220ENST00000613444 SKIDA1Q1XH10 827 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 ACCSLQ4AC99 568 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 TEDDM1Q5T9Z0 273 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 MICALCLQ6ZW33 695 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 ZSWIM9Q86XI8 627 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 CHST14Q8NCH0 376 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 MDGA1Q8NFP4 955 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 BLOC1S5Q8TDH9 187 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 RMDN1Q96DB5 314 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 ECHDC3Q96DC8 303 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 ADGRE3Q9BY15 652 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 CPEB1Q9BZB8 566 aaKnown RBP14.35□□□□□ -0.11
USP39-220ENST00000613444 UBE2ZQ9H832 354 aaPredicted RBP14.35□□□□□ -0.11
USP39-220ENST00000613444 F5P12259 2224 aa14.35□□□□□ -0.11
USP39-220ENST00000613444 HMX2A2RU54 273 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 AURKAO14965 403 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 MBTPS2O43462 519 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 ACVR1Q04771 509 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 BCL2L1Q07817 233 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 ITPRIPL2Q3MIP1 535 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 HSP90AA5PQ58FG0 334 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 KIAA0930Q6ICG6 404 aaPredicted RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 TRABD2AQ86V40 505 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 KCNMB4Q86W47 210 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 PDCD6IPQ8WUM4 868 aaKnown RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 TUBGCP5Q96RT8 1024 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 AGAP2Q99490 1192 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 CDX2Q99626 313 aaPredicted RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 MCMBPQ9BTE3 642 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 ATP13A3Q9H7F0 1226 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 PPANQ9NQ55 473 aaKnown RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 C20orf96Q9NUD7 363 aaPredicted RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.34□□□□□ -0.114e-10■■■□□ 17.5
USP39-220ENST00000613444 HCN2Q9UL51 889 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 ARL5AQ9Y689 179 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 C2CD4DB7Z1M9 353 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 POP4O95707 220 aaKnown RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 INHBAP08476 426 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 CA4P22748 312 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 PSMA3P25788 255 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 SMAD4Q13485 552 aaKnown RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 NAB1Q13506 487 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 EIF4HQ15056 248 aaKnown RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 CCDC85BQ15834 202 aaPredicted RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 ARMC12Q5T9G4 340 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 Q7L0L9 218 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 NLRP9Q7RTR0 991 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 SPOCK2Q92563 424 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 PTPRN2Q92932 1015 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 PEX13Q92968 403 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 STMN4Q9H169 189 aaPredicted RBP14.34□□□□□ -0.11
USP39-220ENST00000613444 RIMKLBQ9ULI2 386 aa14.34□□□□□ -0.11
USP39-220ENST00000613444 ANTXRLA6NF34 631 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 GOLGA8TH3BQL2 631 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 TIMM44O43615 452 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 SIN3BO75182 1162 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 VAPBO95292 243 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 NR1D1P20393 614 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 GRIA4P48058 902 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 ARSDP51689 593 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 RPL26P61254 145 aaKnown RBP14.33□□□□□ -0.11
USP39-220ENST00000613444 PTPRCAPQ14761 206 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 AAK1Q2M2I8 961 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 PDPK2PQ6A1A2 396 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 RASSF3Q86WH2 238 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 CNTN4Q8IWV2 1026 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 RYBPQ8N488 228 aaPredicted RBP14.33□□□□□ -0.11
USP39-220ENST00000613444 FAM76AQ8TAV0 307 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 CDKL2Q92772 493 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 MTG2Q9H4K7 406 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 FBRSL1Q9HCM7 1045 aaKnown RBP14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms