RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TSGA10Q9BZW7 698 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 GDF3Q9NR23 364 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 AMFRQ9UKV5 643 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 CA5BQ9Y2D0 317 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 FNDC3AQ9Y2H6 1198 aaKnown RBP16.98■□□□□ 0.31
TRIM28-215ENST00000601150 PCDHGC4Q9Y5F7 938 aa16.98■□□□□ 0.31
TRIM28-215ENST00000601150 KNL1Q8NG31 2342 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 H0Y8X5 98 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 KCNK1O00180 336 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 KCNK3O14649 394 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 TM7SF2O76062 418 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 JCHAINP01591 159 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 CD59P13987 128 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 CSRP1P21291 193 aaKnown RBP16.97■□□□□ 0.31
TRIM28-215ENST00000601150 MMP12P39900 470 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 RWDD2BP57060 319 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 GCNT7Q6ZNI0 430 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 ERMP1Q7Z2K6 904 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 PEX26Q7Z412 305 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 RNF10Q8N5U6 811 aaKnown RBP16.97■□□□□ 0.31
TRIM28-215ENST00000601150 DENND6BQ8NEG7 585 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 PDCD6IPQ8WUM4 868 aaKnown RBP16.97■□□□□ 0.31
TRIM28-215ENST00000601150 SPOCK2Q92563 424 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 P3H4Q92791 437 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 IL12RB2Q99665 862 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 C1QTNF7Q9BXJ2 289 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 TM7SF3Q9NS93 570 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 TTLL3Q9Y4R7 772 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 HS3ST3A1Q9Y663 406 aa16.97■□□□□ 0.31
TRIM28-215ENST00000601150 A6NNZ2 444 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 RAD51BO15315 384 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 KRT86O43790 486 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 NRDCO43847 1150 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 CPP00450 1065 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PRKCGP05129 697 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 HLA-DQB2P05538 268 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PECAM1P16284 738 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-215ENST00000601150 CETN2P41208 172 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PEX5P50542 639 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 CCT8P50990 548 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 CLDN2P57739 230 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 FAM193AP78312 1265 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 DSC2Q02487 901 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 ADCY2Q08462 1091 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 TRAF2Q12933 501 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PPM1JQ5JR12 505 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 BBS12Q6ZW61 710 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 ABI3BPQ7Z7G0 1075 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PIP4P1Q86T03 277 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 SPATS2Q86XZ4 545 aaKnown RBP16.96■□□□□ 0.31
TRIM28-215ENST00000601150 OXR1Q8N573 874 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 ELF4Q99607 663 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-215ENST00000601150 KLF6Q99612 283 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-215ENST00000601150 HEMGNQ9BXL5 484 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 ERVMER34-1Q9H9K5 563 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 SAE1Q9UBE0 346 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PCDHB9Q9Y5E1 797 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 PCDHGB2Q9Y5G2 931 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 RAI2Q9Y5P3 530 aa16.96■□□□□ 0.31
TRIM28-215ENST00000601150 A0A1B0GTQ1 180 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 CFAP69A5D8W1 941 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 MIF4GDA9UHW6 222 aaKnown RBP16.95■□□□□ 0.3
TRIM28-215ENST00000601150 FPGTO14772 594 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 KCNK5O95279 499 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 PGLSO95336 258 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 THEGLP0DJG4 465 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 KCNA4P22459 653 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 NFKBIAP25963 317 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 PTPN7P35236 360 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 LIG3P49916 1009 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 SEMG2Q02383 582 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 ZBTB17Q13105 803 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 PRKD1Q15139 912 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-215ENST00000601150 ARMC12Q5T9G4 340 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 KYAT3Q6YP21 454 aaKnown RBP16.95■□□□□ 0.3
TRIM28-215ENST00000601150 DPPA4Q7L190 304 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.95■□□□□ 0.3
TRIM28-215ENST00000601150 UBL4BQ8N7F7 174 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 OR13H1Q8NG92 308 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 ARRDC2Q8TBH0 407 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 TFB1MQ8WVM0 346 aaKnown RBP16.95■□□□□ 0.3
TRIM28-215ENST00000601150 BMFQ96LC9 184 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 OSBPL8Q9BZF1 889 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 SLC32A1Q9H598 525 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 PHTF1Q9UMS5 762 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 GUCA1BQ9UMX6 200 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 EFR3BQ9Y2G0 817 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 CAPN6Q9Y6Q1 641 aa16.95■□□□□ 0.3
TRIM28-215ENST00000601150 CACNA1AO00555 2505 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 POM121BA6NF01 834 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 YKT6O15498 198 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 FTCDO95954 541 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CCDC175P0C221 793 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 C6P13671 934 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CA4P22748 312 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 ARRB1P49407 418 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 NOVA1P51513 510 aaKnown RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CCZ1BP86790 482 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CCZ1P86791 482 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 NIPAL4Q0D2K0 466 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms