RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	CCNY	Q8ND76	341 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	TFB1M	Q8WVM0	346 aa	Known RBP	12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	SKA1	Q96BD8	255 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	PARD6B	Q9BYG5	372 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	RAB17	Q9H0T7	212 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	MTG2	Q9H4K7	406 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	NOL6	Q9H6R4	1146 aa	Known RBP	12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	FTSJ1	Q9UET6	329 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	ASIC3	Q9UHC3	531 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	INTS6	Q9UL03	887 aa	Known RBP	12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	SNX24	Q9Y343	169 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012	NEU2	Q9Y3R4	380 aa		12.85	□□□□□ -0.35
UPF1-208	ENST00000600012		A0A1B0GTQ1	180 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	CFAP69	A5D8W1	941 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	TRABD2B	A6NFA1	517 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	FAM47DP	A6NHR8	397 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	LRRC72	A6NJI9	287 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	HACD1	B0YJ81	288 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	SRPRA	P08240	638 aa	Known RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	GARS	P41250	739 aa	Known RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	MAPKAPK2	P49137	400 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	NUMB	P49757	651 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	PRKD1	Q15139	912 aa	Predicted RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	SMAD1	Q15797	465 aa	Known RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	DUPD1	Q68J44	220 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	NCEH1	Q6PIU2	408 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	SYDE1	Q6ZW31	735 aa	Predicted RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	CARNMT1	Q8N4J0	409 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	ATPAF2	Q8N5M1	289 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	LZTR1	Q8N653	840 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	CCDC89	Q8N998	374 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	OR2T34	Q8NGX1	318 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	HDAC11	Q96DB2	347 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	MRGPRX3	Q96LB0	322 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	SLC6A18	Q96N87	628 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	ERP44	Q9BS26	406 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	USP29	Q9HBJ7	922 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	PCDH9	Q9HC56	1237 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	GDF3	Q9NR23	364 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	FEZ2	Q9UHY8	353 aa	Predicted RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	FZD4	Q9ULV1	537 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	TPX2	Q9ULW0	747 aa	Known RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	UTP11	Q9Y3A2	253 aa	Known RBP	12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	ITPR1	Q14643	2758 aa		12.84	□□□□□ -0.35
UPF1-208	ENST00000600012	ASXL3	Q9C0F0	2248 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	EDDM13	A0A1B0GTR0	161 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012		A0A1B0GVM2	712 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012		A0A1W2PP55	124 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	TCAF2	A6NFQ2	919 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	RASA4B	C9J798	803 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	MID1	O15344	667 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	YKT6	O15498	198 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	RASA4	O43374	803 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	LUC7L3	O95232	432 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	MX2	P20592	715 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	OR1E1	P30953	314 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	RPL21	P46778	160 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	PAPOLA	P51003	745 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	CDH4	P55283	916 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	IL9R	Q01113	521 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	CYP4F3	Q08477	520 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	PPID	Q08752	370 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	CAMK2B	Q13554	666 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	CCDC157	Q569K6	752 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	PITRM1	Q5JRX3	1037 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	C9orf64	Q5T6V5	341 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	IFT20	Q8IY31	132 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	UMODL1-AS1	Q8N2C9	162 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	TAB3	Q8N5C8	712 aa	Predicted RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	PDCD7	Q8N8D1	485 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	OR52K2	Q8NGK3	314 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	HNRNPLL	Q8WVV9	542 aa	Known RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	HTR3C	Q8WXA8	447 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	IFT81	Q8WYA0	676 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	HMCES	Q96FZ2	354 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	ELF4	Q99607	663 aa	Predicted RBP	12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	OMD	Q99983	421 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	CEP41	Q9BYV8	373 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	NEUROG2	Q9H2A3	272 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	SEPT10	Q9P0V9	454 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	SERGEF	Q9UGK8	458 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	RAB21	Q9UL25	225 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	ERVW-1	Q9UQF0	538 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	PCDHGA1	Q9Y5H4	931 aa		12.83	□□□□□ -0.36
UPF1-208	ENST00000600012	FAM149A	A5PLN7	773 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	KCNK1	O00180	336 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RNF103	O00237	685 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RAMP2	O60895	175 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	CLDN11	O75508	207 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RNASEH2A	O75792	299 aa	Known RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RHOC	P08134	193 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	MYBL2	P10244	700 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	SLC8A1	P32418	973 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RPL22	P35268	128 aa	Known RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	ACVRL1	P37023	503 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	CARS	P49589	748 aa	Known RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	CCR5	P51681	352 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	NDST2	P52849	883 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	ECT2L	Q008S8	904 aa		12.82	□□□□□ -0.36

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