RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ERP44Q9BS26 406 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 GTPBP2Q9BX10 602 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 TRIM31Q9BZY9 425 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 POLR1EQ9GZS1 481 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 GBA3Q9H227 469 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 GOLGA6AQ9NYA3 693 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 PLA2G4CQ9UP65 541 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 ERVW-1Q9UQF0 538 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 HS3ST2Q9Y278 367 aa12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 V9GYY5 206 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-213ENST00000597325 ATXN2Q99700 1313 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 TARSL2A2RTX5 802 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 ZBTB24O43167 697 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 MAP3K13O43283 966 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 CBFA2T3O75081 653 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 DKK1O94907 266 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 PEX11BO96011 259 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 NTRK1P04629 796 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 SRPRAP08240 638 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 NFKB1P19838 968 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 RPL22P35268 128 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 FDFT1P37268 417 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 CTSOP43234 321 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 LMAN1P49257 510 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 STK19P49842 368 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 GALK1P51570 392 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 ATXN3P54252 364 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 CALCOCO2Q13137 446 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 SLC14A1Q13336 389 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 ACCSLQ4AC99 568 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 FNDC3BQ53EP0 1204 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 SPDYCQ5MJ68 293 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 NAIF1Q69YI7 327 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 PRUNE1Q86TP1 453 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 MARCH9Q86YJ5 346 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 TMEFF1Q8IYR6 380 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 TAB3Q8N5C8 712 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 GLIS1Q8NBF1 620 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 MDGA1Q8NFP4 955 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 TSTD1Q8NFU3 115 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 CYB5D2Q8WUJ1 264 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 SNF8Q96H20 258 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 DCBLD2Q96PD2 775 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 CEP44Q9C0F1 390 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 DPH5Q9H2P9 285 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 RAB6BQ9NRW1 208 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 ELOVL2Q9NXB9 296 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 SLC6A14Q9UN76 642 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 APOBEC2Q9Y235 224 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 FCF1Q9Y324 198 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 NEU2Q9Y3R4 380 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 ACTL7AQ9Y615 435 aa12.19□□□□□ -0.46
SHKBP1-213ENST00000597325 COL5A1P20908 1838 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 SPTAN1Q13813 2472 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PRRT4C9JH25 899 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 F5H423 210 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 WISP1O95388 367 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 IGSF6O95976 241 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 CFIP05156 583 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 SERPINF2P08697 491 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 SRCP12931 536 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 ITPKAP23677 461 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PSMB4P28070 264 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 P2RY2P41231 377 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 DPP6P42658 865 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 TNFRSF4P43489 277 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 TNNT3P45378 269 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 RECQLP46063 649 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 MAXP61244 160 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 CYTH1Q15438 398 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 DUOXA1Q1HG43 343 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PARP6Q2NL67 630 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 IZUMO3Q5VZ72 239 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 TMEM215Q68D42 235 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 C22orf39Q6P5X5 142 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 ARMCX6Q7L4S7 300 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 LPCAT2Q7L5N7 544 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PCGF5Q86SE9 256 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 IFT20Q8IY31 132 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 SH2D3CQ8N5H7 860 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PCDH20Q8N6Y1 951 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 FRMD1Q8N878 549 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 MYRIPQ8NFW9 859 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 SORCS1Q8WY21 1168 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 RPL10LQ96L21 214 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 GDAP1L1Q96MZ0 367 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 FCRL3Q96P31 734 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PSKH2Q96QS6 385 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 MGME1Q9BQP7 344 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 GLOD4Q9HC38 313 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 EPB41L5Q9HCM4 733 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 FAM114A2Q9NRY5 505 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 TOR4AQ9NXH8 423 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 ATP8A1Q9Y2Q0 1164 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 PCDHB9Q9Y5E1 797 aa12.18□□□□□ -0.46
SHKBP1-213ENST00000597325 MYOFQ9NZM1 2061 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms