RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OFCC1Q8IZS5 231 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 DCBLD1Q8N8Z6 715 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 RMND5BQ96G75 393 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 SOX17Q9H6I2 414 aaPredicted RBP15.36■□□□□ 0.05
UPF1-204ENST00000596842 CROTQ9UKG9 612 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 NRCAMQ92823 1304 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 SNX17Q15036 470 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 TMEM151AQ8N4L1 468 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 PALMDQ9NP74 551 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 CACNA2D2Q9NY47 1150 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 TMCO1Q9UM00 188 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 PCDHGA7Q9Y5G6 932 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 PSME4Q14997 1843 aa15.36■□□□□ 0.05
UPF1-204ENST00000596842 PARP14Q460N5 1801 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 PNPLA4P41247 253 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 NR1H2P55055 460 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 NAA20P61599 178 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 TBCELQ5QJ74 424 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SDHAF4Q5VUM1 108 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 CHST15Q7LFX5 561 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 LINC01465Q8N7H1 131 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 OLFM1Q99784 485 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 EFHD1Q9BUP0 239 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 ADAMTS10Q9H324 1103 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SPAG4Q9NPE6 437 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 CPA4Q9UI42 421 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 DMTF1Q9Y222 760 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 ANKRD6Q9Y2G4 727 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SLCO1B7G3V0H7 640 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 NCAM2O15394 837 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SNRPB2P08579 225 aaKnown RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 GNAO1P09471 354 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 ATP5F1P24539 256 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 MAGEA12P43365 314 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 STT3AP46977 705 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 KCTD11Q693B1 232 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 ZNF554Q86TJ5 538 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 LINC00523Q86TU6 105 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 DHFR2Q86XF0 187 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 IFNLR1Q8IU57 520 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 SPPL2BQ8TCT7 592 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SENP6Q9GZR1 1112 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 AAR2Q9Y312 384 aaKnown RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 SIP14410 1827 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 PAMP19021 973 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 SH3BGRP55822 239 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 IKBKEQ14164 716 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 TTC33Q6PID6 262 aaPredicted RBP15.35■□□□□ 0.05
UPF1-204ENST00000596842 NCSTNQ92542 709 aa15.35■□□□□ 0.05
UPF1-204ENST00000596842 A8MT66 165 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 MTSS1O43312 755 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 B3GAT3O94766 335 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 POMCP01189 267 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 HMBSP08397 361 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 PIWIL4Q7Z3Z4 852 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 AHI1Q8N157 1196 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 CBR4Q8N4T8 237 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 DNAJB14Q8TBM8 379 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 ANKRD49Q8WVL7 239 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 DLG3Q92796 817 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 PBXIP1Q96AQ6 731 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 ZNF419Q96HQ0 510 aaPredicted RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 KCNA7Q96RP8 456 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 MRPL57Q9BQC6 102 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 SLC39A8Q9C0K1 460 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 MYRFQ9Y2G1 1151 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 RNF11Q9Y3C5 154 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 KCTD3Q9Y597 815 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 PRSS51A0A1B0GVH4 220 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 ERI2A8K979 691 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 ACOT8O14734 319 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 GPR32O75388 356 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 SNAI1O95863 264 aaPredicted RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 HLA-DQB2P05538 268 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 BTBD8Q5XKL5 378 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 CPNE9Q8IYJ1 553 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 TMEM102Q8N9M5 508 aaPredicted RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 ZMIZ2Q8NF64 920 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 TUBGCP3Q96CW5 907 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 SEPHS2Q99611 448 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 HAUS8Q9BT25 410 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 SELENONQ9NZV5 590 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 TRAF6Q9Y4K3 522 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 UBA6A0AVT1 1052 aaPredicted RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 NRP2O60462 931 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 TSPAN3O60637 253 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 EEF1B2P24534 225 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 BRCC3P46736 316 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 YAP1P46937 504 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 TMEM259Q4ZIN3 620 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 AGAP9Q5VTM2 703 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 ASB9Q96DX5 294 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 GLOD4Q9HC38 313 aa15.34■□□□□ 0.05
UPF1-204ENST00000596842 CNOT6Q9ULM6 557 aaKnown RBP15.34■□□□□ 0.05
UPF1-204ENST00000596842 FBP2O00757 339 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 BAIAP3O94812 1187 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 IPO13O94829 963 aaKnown RBP15.33■□□□□ 0.05
UPF1-204ENST00000596842 GFAPP14136 432 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 SCNN1GP51170 649 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 NDST2P52849 883 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms