RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PMS2P1A4D2B8 440 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 SOWAHDA6NJG2 315 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 AREL1O15033 823 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 MUSKO15146 869 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 ATXN7O15265 892 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 FGF10O15520 208 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 CREB3O43889 395 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 MTA2O94776 668 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 TMCC1O94876 653 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 PROSCO94903 275 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 NDUFA10O95299 355 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 IPO7O95373 1038 aaKnown RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 GP1BAP07359 652 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 CELA2BP08218 269 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 EPHB2P29323 1055 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 ZNF135P52742 658 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 TPI1P60174 286 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 TCEAL1Q15170 157 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 CYTH1Q15438 398 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 TCEA2Q15560 299 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 ISXQ2M1V0 245 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 FAXCQ5TGI0 409 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 ZCCHC8Q6NZY4 707 aaKnown RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 GPR155Q7Z3F1 870 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 TP53I13Q8NBR0 393 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 SLC35G2Q8TBE7 412 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 ASB12Q8WXK4 309 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 RAB7BQ96AH8 199 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 HMCESQ96FZ2 354 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 EXOC2Q96KP1 924 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 IL12RB2Q99665 862 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 BAG1Q99933 345 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 WRAP53Q9BUR4 548 aaKnown RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 CLPBQ9H078 707 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 DHX35Q9H5Z1 703 aaKnown RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 CATSPERBQ9H7T0 1116 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 GPATCH2LQ9NWQ4 482 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 SALL4Q9UJQ4 1053 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 SATB2Q9UPW6 733 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 EPN1Q9Y6I3 576 aaPredicted RBP12.62□□□□□ -0.39
UPF1-203ENST00000594504 CSNK1G3Q9Y6M4 447 aa12.62□□□□□ -0.39
UPF1-203ENST00000594504 LRRK1Q38SD2 2015 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 CXorf51AA0A1B0GTR3 108 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 EME2A4GXA9 379 aaPredicted RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 WASH4PA8MWX3 477 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 RASA4BC9J798 803 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 EEF2KO00418 725 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 RASA4O43374 803 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 TM7SF2O76062 418 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 PIGNO95427 931 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 IL1R2P27930 398 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 MAN1A1P33908 653 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 ARHGAP25P42331 645 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 MAGEA1P43355 309 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 LSSP48449 732 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 THOP1P52888 689 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 GEMIN4P57678 1058 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 GSDMDP57764 484 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 RHOAP61586 193 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 SLC25A11Q02978 314 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 CA9Q16790 459 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 HADHQ16836 314 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 PRRT3Q5FWE3 981 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 C3orf38Q5JPI3 329 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 FOXR1Q6PIV2 292 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 PCSK4Q6UW60 755 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 PHACTR4Q8IZ21 702 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 RTL3Q8N8U3 475 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 ZNF248Q8NDW4 579 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 CXorf40AQ8TE69 158 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 TEKT4Q8WW24 435 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 ATXN7L3BQ96GX2 97 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 ZNF578Q96N58 590 aaPredicted RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 KCTD15Q96SI1 283 aaPredicted RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 OSBPL1AQ9BXW6 950 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 POLR1BQ9H9Y6 1135 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 USP29Q9HBJ7 922 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 CPNE5Q9HCH3 593 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 DONSONQ9NYP3 566 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 SPASTQ9UBP0 616 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 APOBEC3BQ9UH17 382 aaKnown RBP12.61□□□□□ -0.39
UPF1-203ENST00000594504 PCDHA13Q9Y5I0 950 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 ENTPD2Q9Y5L3 495 aa12.61□□□□□ -0.39
UPF1-203ENST00000594504 ASXL3Q9C0F0 2248 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 GOLGA6L3A6NEY3 463 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 YY2O15391 372 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 IGSF6O95976 241 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 PRKCGP05129 697 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 RARAP10276 462 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 TCF4P15884 667 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 TSHRP16473 764 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 SSR1P43307 286 aaKnown RBP12.6□□□□□ -0.39
UPF1-203ENST00000594504 HCAR3P49019 387 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 PCBP4P57723 403 aaKnown RBP12.6□□□□□ -0.39
UPF1-203ENST00000594504 C19orf57Q0VDD7 668 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 PTK2BQ14289 1009 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 IRF4Q15306 451 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 NR0B2Q15466 257 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 DPYSL2Q16555 572 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 SMTNL2Q2TAL5 461 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms