RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZNF333Q96JL9 665 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 NDNQ99608 321 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 YIPF1Q9Y548 306 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 TM7SF2O76062 418 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 LAG3P18627 525 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 RPL14P50914 215 aaKnown RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 PRAMEP78395 509 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 PRKAA1Q13131 559 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 VEPH1Q14D04 833 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 KHDC1Q4VXA5 237 aaKnown RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 PTAR1Q7Z6K3 402 aaPredicted RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 SPATA6LQ8N4H0 392 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 OR7D4Q8NG98 312 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 PDCD6IPQ8WUM4 868 aaKnown RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 HDAC3O15379 428 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 CLDN11O75508 207 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 PIGNO95427 931 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TIMP1P01033 207 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 URODP06132 367 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 SERPINF2P08697 491 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 DNAJB13P59910 316 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 RPS24P62847 133 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 ILF2Q12905 390 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 RAB33AQ14088 237 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 ACSBG2Q5FVE4 666 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TECRLQ5HYJ1 363 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 DENND1CQ8IV53 801 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 CMTR2Q8IYT2 770 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 LSMEM2Q8N112 164 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 BBS5Q8N3I7 341 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 OR6P1Q8NGX9 317 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 WDR60Q8WVS4 1066 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 MOCOSQ96EN8 888 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 PSKH2Q96QS6 385 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TRIB3Q96RU7 358 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 MARCH4Q9P2E8 410 aaPredicted RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 SEPT3Q9UH03 358 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 MCM8Q9UJA3 840 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 RIMKLBQ9ULI2 386 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 KCTD3Q9Y597 815 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 NPHS1O60500 1241 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 STC2O76061 302 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 WISP3O95389 354 aaPredicted RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 S1PR4O95977 384 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 KLKB1P03952 638 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 CSF2RAP15509 400 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 ELF1P32519 619 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 CCR10P46092 362 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 COPAP53621 1224 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 FAM83EQ2M2I3 478 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 FSCBQ5H9T9 825 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 HECTD2Q5U5R9 776 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 SEL1L3Q68CR1 1132 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 DDX53Q86TM3 631 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TXNDC5Q8NBS9 432 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 AGR3Q8TD06 166 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TRMT2BQ96GJ1 504 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 UBXN10Q96LJ8 280 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 C11orf49Q9H6J7 331 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 RC3H2Q9HBD1 1191 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 TCF7L2Q9NQB0 619 aa19.79■□□□□ 0.76
CLIP3-206ENST00000593074 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.79■□□□□ 0.76
CLIP3-206ENST00000593074 CARNS1A5YM72 827 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 SLCO1B7G3V0H7 640 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 CCL22O00626 93 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 PRRG1O14668 218 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 KDELR3O43731 214 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 SNUPNO95149 360 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 LTA4HP09960 611 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 GLDCP23378 1020 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 CORO1AP31146 461 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 PLD1Q13393 1074 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 CSHL1Q14406 222 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 LRRC26Q2I0M4 334 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 AGAP9Q5VTM2 703 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 IL31Q6EBC2 164 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 CHST9Q7L1S5 443 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 PIWIL4Q7Z3Z4 852 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 SCUBE1Q8IWY4 988 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 GPR150Q8NGU9 434 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 BRSK1Q8TDC3 778 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 PAWRQ96IZ0 340 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 TACO1Q9BSH4 297 aaKnown RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 ACSS2Q9NR19 701 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 MAN1C1Q9NR34 630 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 WBP1LQ9NX94 342 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 UBA2Q9UBT2 640 aaPredicted RBP19.78■□□□□ 0.76
CLIP3-206ENST00000593074 ARL5AQ9Y689 179 aa19.78■□□□□ 0.76
CLIP3-206ENST00000593074 ILVBLA1L0T0 632 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 ZBTB14O43829 449 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 EFCAB14O75071 495 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 NDST3O95803 873 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 NCF2P19878 526 aaPredicted RBP19.77■□□□□ 0.76
CLIP3-206ENST00000593074 ATP5F1P24539 256 aaPredicted RBP19.77■□□□□ 0.76
CLIP3-206ENST00000593074 ITGB8P26012 769 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 PRDX6P30041 224 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 SERPINB5P36952 375 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 PPP3CCP48454 512 aa19.77■□□□□ 0.76
CLIP3-206ENST00000593074 WDR5P61964 334 aaKnown RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms