RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CTSEP14091 401 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 RPL7AP62424 266 aaKnown RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 PPP1R15BQ5SWA1 713 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 DNAJC24Q6P3W2 148 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 INO80CQ6PI98 192 aaPredicted RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 ENPP7Q6UWV6 458 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 KYQ8NBH2 561 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 PCDH19Q8TAB3 1148 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 ZNF641Q96N77 438 aaPredicted RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 APOOQ9BUR5 198 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 LRRC19Q9H756 370 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 UBA2Q9UBT2 640 aaPredicted RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 RABGEF1Q9UJ41 708 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 ANKRD36A6QL64 1941 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 ANKRD62A6NC57 917 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 ITGA2BP08514 1039 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 HTR1BP28222 390 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 CLN3Q13286 438 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 INPP5AQ14642 412 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 SYCP1Q15431 976 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 BRAT1Q6PJG6 821 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 NYAP1Q6ZVC0 841 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 GKN2Q86XP6 184 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 CCDC74AQ96AQ1 378 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 MCEEQ96PE7 176 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 CNPY3Q9BT09 278 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.24■□□□□ 0.99
VPS53-216ENST00000574029 SEMA4CQ9C0C4 833 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 SYNDIG1Q9H7V2 258 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 FANCLQ9NW38 375 aa21.24■□□□□ 0.99
VPS53-216ENST00000574029 ATMQ13315 3056 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 J3KR12 359 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 BUB1BO60566 1050 aaPredicted RBP21.23■□□□□ 0.99
VPS53-216ENST00000574029 HTR7P34969 479 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 MMP12P39900 470 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 LIG3P49916 1009 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 NDST2P52849 883 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 COPB1P53618 953 aaKnown RBP21.23■□□□□ 0.99
VPS53-216ENST00000574029 SRP54P61011 504 aaKnown RBP21.23■□□□□ 0.99
VPS53-216ENST00000574029 ERAP2Q6P179 960 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 B3GNT8Q7Z7M8 397 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 ZSWIM9Q86XI8 627 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 NEK11Q8NG66 645 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 ATL2Q8NHH9 583 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 TUBGCP5Q96RT8 1024 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 AGPAT1Q99943 283 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 SIRPGQ9P1W8 387 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 KLQ9UEF7 1012 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 GPR34Q9UPC5 381 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 OR1A2Q9Y585 309 aa21.23■□□□□ 0.99
VPS53-216ENST00000574029 A0A1W2PQM1 296 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 GOLGA6L22H0YM25 854 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 PRAMEF11O60813 436 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 CSNK1DP48730 415 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 TPI1P60174 286 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 CCL7P80098 99 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 EIF3IQ13347 325 aaKnown RBP21.22■□□□□ 0.99
VPS53-216ENST00000574029 MTM1Q13496 603 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 LY6DQ14210 128 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 TCEA2Q15560 299 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 CCDC81Q6ZN84 652 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 RD3Q7Z3Z2 195 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 OR6C4Q8NGE1 309 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 WDR92Q96MX6 357 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 GFM1Q96RP9 751 aaKnown RBP21.22■□□□□ 0.99
VPS53-216ENST00000574029 RBM15Q96T37 977 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS53-216ENST00000574029 SEPT11Q9NVA2 429 aaKnown RBP21.22■□□□□ 0.99
VPS53-216ENST00000574029 DONSONQ9NYP3 566 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 ATP8A1Q9Y2Q0 1164 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 DGKBQ9Y6T7 804 aa21.22■□□□□ 0.99
VPS53-216ENST00000574029 CFAP69A5D8W1 941 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 D6RAR5 112 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 TMX2-CTNND1H3BSU7 103 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 PLD2O14939 933 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 TNFP01375 233 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 PCCBP05166 539 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 RPLP0P05388 317 aaKnown RBP21.21■□□□□ 0.99
VPS53-216ENST00000574029 OGDHQ02218 1023 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 CFAP58Q5T655 872 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 KCTD16Q68DU8 428 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 CAMK1DQ8IU85 385 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 FBXO39Q8N4B4 442 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 GPR156Q8NFN8 814 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 PCMTD1Q96MG8 357 aaPredicted RBP21.21■□□□□ 0.99
VPS53-216ENST00000574029 EPB41L5Q9HCM4 733 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 LIMA1Q9UHB6 759 aaKnown RBP21.21■□□□□ 0.99
VPS53-216ENST00000574029 PCDHGA7Q9Y5G6 932 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 CFAP46Q8IYW2 2715 aa21.21■□□□□ 0.99
VPS53-216ENST00000574029 SCN8AQ9UQD0 1980 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 LGALS16A8MUM7 142 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 J3QKU1 62 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 PRKCGP05129 697 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 CCKBRP32239 447 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 UGT1A5P35504 534 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 RGRP47804 291 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 INHBCP55103 352 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 RALGDSQ12967 914 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 KIAA1614Q5VZ46 1190 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 ACAD10Q6JQN1 1059 aa21.2■□□□□ 0.98
VPS53-216ENST00000574029 DCUN1D2Q6PH85 259 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms