RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 BCO1Q9HAY6 547 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PLA2G3Q9NZ20 509 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 ST3GAL5Q9UNP4 418 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PCDHA3Q9Y5H8 950 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PCDHA13Q9Y5I0 950 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 PIAS3Q9Y6X2 628 aa6.32□□□□□ -1.4
VPS53-212ENST00000572259 NCOR1O75376 2440 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 IGKV6-21A0A0C4DH24 114 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 A0A1W2PRX2 142 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 ARHGEF35A5YM69 484 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 A8MXE2 369 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 TAF4O00268 1085 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 TXNL1O43396 289 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 SYNCRIPO60506 623 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 SOCS5O75159 536 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 GPR32O75388 356 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 ITGA10O75578 1167 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 CA3P07451 260 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 SNRNP70P08621 437 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 TMIGD3P0DMS9 266 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 FOSL2P15408 326 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 CRHR1P34998 444 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 PTPN7P35236 360 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 CCT6AP40227 531 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 SSR1P43307 286 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 CARSP49589 748 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 GPC3P51654 580 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 ARFIP2P53365 341 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 SH3BGRP55822 239 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 DEFB103AP81534 67 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 HSP90B2PQ58FF3 399 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 DEPDC1Q5TB30 811 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 PLA2G4FQ68DD2 849 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 WDR73Q6P4I2 378 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 C16orf87Q6PH81 154 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS53-212ENST00000572259 SLC24A5Q71RS6 500 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 H1FNTQ75WM6 255 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 SH2D3CQ8N5H7 860 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 AOPEPQ8N6M6 819 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 C10orf53Q8N6V4 93 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 MCPH1Q8NEM0 835 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 OR7D4Q8NG98 312 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 OR2I1PQ8NGU4 316 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 OR6B3Q8NGW1 331 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 GRK7Q8WTQ7 553 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 CYFIP2Q96F07 1278 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 LRRC46Q96FV0 321 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 AK8Q96MA6 479 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 C16orf45Q96MC5 204 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 TGS1Q96RS0 853 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 GPHA2Q96T91 129 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 CDX2Q99626 313 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 ADAM2Q99965 735 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 DPYSL5Q9BPU6 564 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 DPH1Q9BZG8 443 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 NT5C3AQ9H0P0 336 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 TNMDQ9H2S6 317 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 DHX33Q9H6R0 707 aaKnown RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 WDCPQ9H6R7 721 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 COPS7BQ9H9Q2 264 aaPredicted RBP6.31□□□□□ -1.4
VPS53-212ENST00000572259 BRF2Q9HAW0 419 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 TDP1Q9NUW8 608 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 NDUFAF4Q9P032 175 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 OAZ3Q9UMX2 235 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 PSAT1Q9Y617 370 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 DUSP10Q9Y6W6 482 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 FAM169AQ9Y6X4 670 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 ADAMTS20P59510 1910 aa6.31□□□□□ -1.4
VPS53-212ENST00000572259 BRWD1Q9NSI6 2320 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 A0A087WZ62 844 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 UBE2QL1A1L167 161 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 PMS2P1A4D2B8 440 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 NPEPPSL1A6NEC2 478 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 STX6O43752 255 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 PIAS2O75928 621 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 ERLIN2O94905 339 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 STBD1O95210 358 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CCNDBP1O95273 360 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 GLP2RO95838 553 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 F9P00740 461 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RB1P06400 928 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 FTH1P19P0C7X4 201 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 DARSP14868 501 aaKnown RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 MYOGP15173 224 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TFEBP19484 476 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SYT1P21579 422 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CASRP41180 1078 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RARRES1P49788 294 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TOB1P50616 345 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 PPP5CP53041 499 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 YWHAHQ04917 246 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 LAMTOR4Q0VGL1 99 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RIN1Q13671 783 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 BTG3Q14201 252 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 EMC2Q15006 297 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SEC23BQ15437 767 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SLC44A4Q53GD3 710 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 KHDC1LQ5JSQ8 128 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms