RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TXNDC9O14530 226 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 WISP3O95389 354 aaPredicted RBP22.91■■□□□ 1.26
VPS53-211ENST00000571805 CAPNS1P04632 268 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 RBP1P09455 135 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 CHN2P52757 468 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 ACAP2Q15057 778 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 PSMD5Q16401 504 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 CUZD1Q86UP6 607 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 ARHGAP18Q8N392 663 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MARVELD2Q8N4S9 558 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 ZFAND2BQ8WV99 257 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 DLG3Q92796 817 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 KLHL32Q96NJ5 620 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 EML4Q9HC35 981 aaKnown RBP22.91■■□□□ 1.26
VPS53-211ENST00000571805 VWA7Q9Y334 891 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 PCDHGA7Q9Y5G6 932 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MROH6A6NGR9 719 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 TNPO2O14787 897 aaKnown RBP22.91■■□□□ 1.26
VPS53-211ENST00000571805 DNAJA2O60884 412 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 CNTN5O94779 1100 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 POLE2P56282 527 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 DSC2Q02487 901 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MARC1Q5VT66 337 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MSANTD2Q6P1R3 559 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 TMEM207Q6UWW9 146 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MON1AQ86VX9 555 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 TSPAN17Q96FV3 270 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 SPATA16Q9BXB7 569 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 MRPL1Q9BYD6 325 aaKnown RBP22.91■■□□□ 1.26
VPS53-211ENST00000571805 COPS7BQ9H9Q2 264 aaPredicted RBP22.91■■□□□ 1.26
VPS53-211ENST00000571805 SCML2Q9UQR0 700 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 TLL2Q9Y6L7 1015 aa22.91■■□□□ 1.26
VPS53-211ENST00000571805 B4GALT3O60512 393 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 RHOQP17081 205 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 CTGFP29279 349 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 PSMD8P48556 350 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ROR2Q01974 943 aaKnown RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 ITKQ08881 620 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 GALNT1Q10472 559 aaPredicted RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 RARS2Q5T160 578 aaKnown RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 SDHAF4Q5VUM1 108 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 CWF19L1Q69YN2 538 aaKnown RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 KLC3Q6P597 504 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 PTAR1Q7Z6K3 402 aaPredicted RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 PIP4K2CQ8TBX8 421 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 CENPKQ9BS16 269 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 UPF3AQ9H1J1 476 aaKnown RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 TMEM248Q9NWD8 314 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 CEP350Q5VT06 3117 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ARHGEF37A1IGU5 675 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 SLC7A4O43246 635 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 S1PR4O95977 384 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 KCNC1P48547 511 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ARSDP51689 593 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 PLK1P53350 603 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ALFQ53S48 1182 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 MS4A13Q5J8X5 152 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 CST9Q5W186 159 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ZNF598Q86UK7 904 aaKnown RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 TEX26Q8N6G2 289 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 FAM156AQ8NDB6 213 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 GABPB2Q8TAK5 448 aaPredicted RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 ZYG11BQ9C0D3 744 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 GSTO2Q9H4Y5 243 aa22.9■■□□□ 1.26
VPS53-211ENST00000571805 ABI2Q9NYB9 513 aaPredicted RBP22.9■■□□□ 1.26
VPS53-211ENST00000571805 TTC24A2A3L6 582 aaPredicted RBP22.89■■□□□ 1.26
VPS53-211ENST00000571805 TRIM38O00635 465 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 RPLP2P05387 115 aaKnown RBP22.89■■□□□ 1.26
VPS53-211ENST00000571805 CYBAP13498 195 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 ATXN3P54252 364 aaPredicted RBP22.89■■□□□ 1.26
VPS53-211ENST00000571805 INHBCP55103 352 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 CDKN2DP55273 166 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PSME3P61289 254 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 LRP8Q14114 963 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PTK2BQ14289 1009 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PPP1R3AQ16821 1122 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 CNPY1Q3B7I2 92 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 LDB1Q86U70 411 aaPredicted RBP22.89■■□□□ 1.26
VPS53-211ENST00000571805 ADCY4Q8NFM4 1077 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 TADA1Q96BN2 335 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PHF21BQ96EK2 531 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PKP2Q99959 881 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 MFSD1Q9H3U5 465 aa22.89■■□□□ 1.26
VPS53-211ENST00000571805 PLXNA3P51805 1871 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 CCL22O00626 93 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 FBP2O00757 339 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 UBFD1O14562 309 aaKnown RBP22.89■■□□□ 1.25
VPS53-211ENST00000571805 GPR15P49685 360 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 TBX4P57082 545 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 SQLEQ14534 574 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 SH3RF2Q8TEC5 729 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 HDAC10Q969S8 669 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 PSMG2Q969U7 264 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 PABPC5Q96DU9 382 aaKnown RBP22.89■■□□□ 1.25
VPS53-211ENST00000571805 ZCWPW1Q9H0M4 648 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 UBAP1Q9NZ09 502 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 MARCH4Q9P2E8 410 aaPredicted RBP22.89■■□□□ 1.25
VPS53-211ENST00000571805 SARDHQ9UL12 918 aa22.89■■□□□ 1.25
VPS53-211ENST00000571805 C15orf38-AP3S2A0A0A6YYH1 394 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 UBDO15205 165 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms