RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 ACADVLP49748 655 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 LIG3P49916 1009 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 MAXP61244 160 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 AP1S1P61966 158 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 EIF2B5Q13144 721 aaKnown RBP18.51■□□□□ 0.55
CLN3-237ENST00000569030 ZNF211Q13398 564 aaPredicted RBP18.51■□□□□ 0.55
CLN3-237ENST00000569030 ZNF235Q14590 738 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 IRF4Q15306 451 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 WSCD2Q2TBF2 565 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 PROX2Q3B8N5 592 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 NCBP2-AS2Q69YL0 99 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 ERAP2Q6P179 960 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 CNGA4Q8IV77 575 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 KDF1Q8NAX2 398 aaPredicted RBP18.51■□□□□ 0.55
CLN3-237ENST00000569030 NOD2Q9HC29 1040 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 PNMA8BQ9ULN7 279 aaPredicted RBP18.51■□□□□ 0.55
CLN3-237ENST00000569030 PCDHGC4Q9Y5F7 938 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 PKD1L2Q7Z442 2459 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 ACACAQ13085 2346 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 FAM149AA5PLN7 773 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 NEBLO76041 1014 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 KRT7P08729 469 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 NME1P15531 152 aaKnown RBP18.5■□□□□ 0.55
CLN3-237ENST00000569030 MAN1A1P33908 653 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 CLDN6P56747 220 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 RALGDSQ12967 914 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 PAFAH1B3Q15102 231 aaKnown RBP18.5■□□□□ 0.55
CLN3-237ENST00000569030 PDK2Q15119 407 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 SMAD1Q15797 465 aaKnown RBP18.5■□□□□ 0.55
CLN3-237ENST00000569030 MARC1Q5VT66 337 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 PARGQ86W56 976 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 PQLC3Q8N755 202 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 TC2NQ8N9U0 490 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 OR4C6Q8NH72 309 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 LRRN4Q8WUT4 740 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 RAPGEF5Q92565 580 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 FAF2Q96CS3 445 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 NUDCD1Q96RS6 583 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 MGME1Q9BQP7 344 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 ZNF670Q9BS34 389 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 C1QTNF7Q9BXJ2 289 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 SCUBE2Q9NQ36 999 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 LCMT1Q9UIC8 334 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 PCDHGA1Q9Y5H4 931 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 CFAP47Q6ZTR5 3102 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 APC2O95996 2303 aa18.5■□□□□ 0.55
CLN3-237ENST00000569030 LAMA5O15230 3695 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 A8MX80 341 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 HTRA2O43464 458 aaPredicted RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 KRT37O76014 449 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 MTA2O94776 668 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 CAPNS1P04632 268 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 CKMT2P17540 419 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 KDELR1P24390 212 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 HSPA9P38646 679 aaKnown RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 GARSP41250 739 aaKnown RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 MMP13P45452 471 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 HNRNPKP61978 463 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLN3-237ENST00000569030 YPEL5P62699 121 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 GALNT2Q10471 571 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 SLC10A2Q12908 348 aaPredicted RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 LRRC14Q15048 493 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 AGERQ15109 404 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 TEX26Q8N6G2 289 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 TCEAL2Q9H3H9 227 aaPredicted RBP18.49■□□□□ 0.55
CLN3-237ENST00000569030 ZMIZ1Q9ULJ6 1067 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 RP1P56715 2156 aa18.49■□□□□ 0.55
CLN3-237ENST00000569030 SCAMP1O15126 338 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 LZTS3O60299 673 aaPredicted RBP18.48■□□□□ 0.55
CLN3-237ENST00000569030 RFPL3O75679 317 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 C1SP09871 688 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 MYF5P13349 255 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 JUNDP17535 347 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 GM2AP17900 193 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 ARHGAP25P42331 645 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 THOP1P52888 689 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 POLR2LP62875 67 aaKnown RBP18.48■□□□□ 0.55
CLN3-237ENST00000569030 GBE1Q04446 702 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 TRAF2Q12933 501 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 LIPIQ6XZB0 460 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 DPPA4Q7L190 304 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 LRRC49Q8IUZ0 686 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 MAP7D3Q8IWC1 876 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 GALNT15Q8N3T1 639 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 PAF1Q8N7H5 531 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 ZNF548Q8NEK5 533 aaPredicted RBP18.48■□□□□ 0.55
CLN3-237ENST00000569030 PDCD6IPQ8WUM4 868 aaKnown RBP18.48■□□□□ 0.55
CLN3-237ENST00000569030 NSMCE1Q8WV22 266 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 RBSNQ9H1K0 784 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 NT5MQ9NPB1 228 aa18.48■□□□□ 0.55
CLN3-237ENST00000569030 CELSR3Q9NYQ7 3312 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 CFAP69A5D8W1 941 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 TMEM8BA6NDV4 472 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 K7ESM1 405 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 ACP1P24666 158 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 PTK2BQ14289 1009 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 IHHQ14623 411 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 INPP5AQ14642 412 aa18.47■□□□□ 0.55
CLN3-237ENST00000569030 ZFYVE27Q5T4F4 411 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms