RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TUBGCP5Q96RT8 1024 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 TRIB3Q96RU7 358 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 HINFPQ9BQA5 517 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 WRAP53Q9BUR4 548 aaKnown RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 C1QTNF2Q9BXJ5 285 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 MAK16Q9BXY0 300 aaKnown RBP9.29□□□□□ -0.92
VPS35-206ENST00000565228 PCED1AQ9H1Q7 454 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 SCUBE2Q9NQ36 999 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 VPS45Q9NRW7 570 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 CHKBQ9Y259 395 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 RAI2Q9Y5P3 530 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 SNX11Q9Y5W9 270 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 ZZEF1O43149 2961 aa9.29□□□□□ -0.92
VPS35-206ENST00000565228 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 POM121BA6NF01 834 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 NPIPB15A6NHN6 443 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 GOLGA8CPA6NN73 597 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 GOLGA6L6A8MZA4 724 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 UPK3BL1B0FP48 263 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 UPK3BL2E5RIL1 263 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 ENC1O14682 589 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 BCAT2O15382 392 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 LRP3O75074 770 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 PGLSO95336 258 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 PAK4O96013 591 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 SERPINF2P08697 491 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 CTPS1P17812 591 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 CXCR5P32302 372 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 IGFALSP35858 605 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 CD86P42081 329 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 COPS2P61201 443 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 AP1S1P61966 158 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 GRIK2Q13002 908 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 ZNF235Q14590 738 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 PDK1Q15118 436 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 TEX44Q53QW1 395 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 FBXL19Q6PCT2 694 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 KDELC1Q6UW63 502 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 ADAT2Q7Z6V5 191 aaKnown RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 LRRC49Q8IUZ0 686 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 SLC35F6Q8N357 371 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 TP53I13Q8NBR0 393 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 PLA2G15Q8NCC3 412 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 SLC35B2Q8TB61 432 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 SPOCK2Q92563 424 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 FOXJ1Q92949 421 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 CENPTQ96BT3 561 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 IMP4Q96G21 291 aaKnown RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 TEKT5Q96M29 485 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 CCDC114Q96M63 670 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 ZNF641Q96N77 438 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 RBM15Q96T37 977 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS35-206ENST00000565228 MLPHQ9BV36 600 aaPredicted RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 TDRD1Q9BXT4 1180 aaKnown RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 OSBPL1AQ9BXW6 950 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 TSGA10Q9BZW7 698 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 PREBQ9HCU5 417 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 GPR27Q9NS67 375 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 DONSONQ9NYP3 566 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 UBP1Q9NZI7 540 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 SEPT10Q9P0V9 454 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 B4GALT6Q9UBX8 382 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 EFR3BQ9Y2G0 817 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 FNDC3AQ9Y2H6 1198 aaKnown RBP9.28□□□□□ -0.92
VPS35-206ENST00000565228 PPIL1Q9Y3C6 166 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 PCDHB9Q9Y5E1 797 aa9.28□□□□□ -0.92
VPS35-206ENST00000565228 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS35-206ENST00000565228 USP24Q9UPU5 2620 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 A0A1B0GTW7 788 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 LRRC72A6NJI9 287 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 MIF4GDA9UHW6 222 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 K7ESM1 405 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ARHGAP33O14559 1287 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 KRT86O43790 486 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 PCDH8O95206 1070 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ATP1A1P05023 1023 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 CFIP05156 583 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 C1SP09871 688 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ETS1P14921 441 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ZFXP17010 805 aaPredicted RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 NFKB1P19838 968 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 MX2P20592 715 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 CA5AP35218 305 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 CTSKP43235 329 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 CHRNA4P43681 627 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 NR2C2P49116 596 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 RENBPP51606 427 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 BCL2L1Q07817 233 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 MSLNQ13421 630 aaPredicted RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 TFDP2Q14188 446 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 CNGA3Q16281 694 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 QPCTQ16769 361 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 DUOXA1Q1HG43 343 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 RSPO4Q2I0M5 234 aaPredicted RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 WSCD2Q2TBF2 565 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SLC45A4Q5BKX6 768 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 WDR45BQ5MNZ6 344 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 TIGD7Q6NT04 549 aaPredicted RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 LIPIQ6XZB0 460 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms