RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 R3HCC1LQ7Z5L2 792 aaKnown RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 FAM160B2Q86V87 743 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 FAM90A1Q86YD7 464 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 MCEMP1Q8IX19 187 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ATAD1Q8NBU5 361 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 NSUN7Q8NE18 718 aaKnown RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZMIZ2Q8NF64 920 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 TEX47Q8TBZ9 253 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 POC1BQ8TC44 478 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ACTRT2Q8TDY3 377 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SNX19Q92543 992 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 INPP5DQ92835 1189 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZKSCAN4Q969J2 545 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZSCAN31Q96LW9 406 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 RPRD1AQ96P16 312 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 VKORC1Q9BQB6 163 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 HEPHQ9BQS7 1158 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PAIP1Q9H074 479 aaKnown RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 OR10A4Q9H209 315 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 GHITMQ9H3K2 345 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 RSAD1Q9HA92 442 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 GPR35Q9HC97 309 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 WASH6PQ9NQA3 447 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ANLNQ9NQW6 1124 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 CNGB3Q9NQW8 809 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 RXFP3Q9NSD7 469 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 HAUS2Q9NVX0 235 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PAQR5Q9NXK6 330 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 WWOXQ9NZC7 414 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 NDUFA13Q9P0J0 144 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 FOXJ2Q9P0K8 574 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 AKAP7Q9P0M2 348 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 SENP1Q9P0U3 644 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ORC3Q9UBD5 711 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 TBC1D29Q9UFV1 150 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SLC7A8Q9UHI5 535 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 VPS28Q9UK41 221 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZDHHC8Q9ULC8 765 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ERVK-19Q9WJR5 959 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 FADS3Q9Y5Q0 445 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 COX11Q9Y6N1 276 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 COMMD3-BMI1R4GMX3 469 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SPATA31A3Q5VYP0 1347 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 A0A1W2PPH5 198 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CCDC151A5D8V7 595 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 PRSS29PA6NIE9 313 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 E7EVH7 732 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 POLRMTO00411 1230 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 NCK2O43639 380 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 KRT86O43790 486 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DOK2O60496 412 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 IDH1O75874 414 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 CCNDBP1O95273 360 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 LCA5LO95447 670 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 IFNA14P01570 189 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 FTLP02792 175 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 HRGP04196 525 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 POLBP06746 335 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ASNSP08243 561 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 WEE2P0C1S8 567 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 RARBP10826 455 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CLUP10909 449 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ITGB6P18564 788 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 LPOP22079 712 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 ADSSP30520 456 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SLC8A1P32418 973 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 NUP62P37198 522 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 ETV5P41161 510 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 OR1G1P47890 313 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ACADVLP49748 655 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CACNA2D1P54289 1103 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SLC12A3P55017 1021 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ASIC1P78348 528 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ABATP80404 500 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 MRPS21P82921 87 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 RBP5P82980 135 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 RALGDSQ12967 914 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 PLD1Q13393 1074 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CAMK2DQ13557 499 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CUL4AQ13619 759 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 HABP2Q14520 560 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 VEPH1Q14D04 833 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 NONOQ15233 471 aaKnown RBP eCLIP5.2□□□□□ -1.58
VPS35-205ENST00000563984 KLHL38Q2WGJ6 581 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 LEXMQ3ZCV2 418 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 TOR1AIP1Q5JTV8 583 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 IFIT1BQ5T764 474 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 TAPT1Q6NXT6 567 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 FAM122CQ6P4D5 195 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 MACC1Q6ZN28 852 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 STXBP4Q6ZWJ1 553 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 HEATR3Q7Z4Q2 680 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 HEATR4Q86WZ0 1026 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 MICU3Q86XE3 530 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DNAAF5Q86Y56 855 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 RFX6Q8HWS3 928 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 LRRC34Q8IZ02 419 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ADGRG5Q8IZF4 528 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 ZNF321PQ8N8H1 164 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 NEK11Q8NG66 645 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms