RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FAM193AP78312 1265 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 SIM1P81133 766 aaPredicted RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 ITKQ08881 620 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 TFDP2Q14188 446 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 PTK2BQ14289 1009 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 FGL2Q14314 439 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 PDK1Q15118 436 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 LRRC73Q5JTD7 316 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 SLC9A4Q6AI14 798 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 GCNT7Q6ZNI0 430 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 Q6ZSR6 202 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 PTAR1Q7Z6K3 402 aaPredicted RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 GLRX5Q86SX6 157 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 KIAA1328Q86T90 577 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 SPATS2Q86XZ4 545 aaKnown RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 RFX6Q8HWS3 928 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 CCDC13Q8IYE1 715 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 SPC24Q8NBT2 197 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 OR13H1Q8NG92 308 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 SPOCK2Q92563 424 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 RNF25Q96BH1 459 aaPredicted RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 RBM22Q9NW64 420 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLK3-213ENST00000563842 KCTD5Q9NXV2 234 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 DTLQ9NZJ0 730 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 GGT7Q9UJ14 662 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 APOBEC2Q9Y235 224 aaKnown RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 CA5BQ9Y2D0 317 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 HEY1Q9Y5J3 304 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 ANKRD11Q6UB99 2663 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 C3orf70A6NLC5 250 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 SPINT1O43278 529 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 HTRA2O43464 458 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 LZTS3O60299 673 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 CBFA2T3O75081 653 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 ZRANB2O95218 330 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLK3-213ENST00000563842 EPHA8P29322 1005 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 MMP12P39900 470 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 NR2C2P49116 596 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 VAV2P52735 878 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 CLDN2P57739 230 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 MAXP61244 160 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 YPEL5P62699 121 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 GBE1Q04446 702 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PPIDQ08752 370 aaKnown RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 COL9A2Q14055 689 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 AGERQ15109 404 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 TFDP3Q5H9I0 405 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PRAMEF14Q5SWL7 426 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 ARMC12Q5T9G4 340 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 RAD9BQ6WBX8 426 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 KATNAL2Q8IYT4 538 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 RCOR2Q8IZ40 523 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PGBD5Q8N414 524 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PLD5Q8N7P1 536 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 TPCN2Q8NHX9 752 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 SAP25Q8TEE9 199 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PDCD6IPQ8WUM4 868 aaKnown RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 RBM41Q96IZ5 413 aaKnown RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 BMFQ96LC9 184 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 CAMK1GQ96NX5 476 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 KLF6Q99612 283 aaPredicted RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 SEMA3CQ99985 751 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 WRAP53Q9BUR4 548 aaKnown RBP13.48□□□□□ -0.25
CLK3-213ENST00000563842 NOD2Q9HC29 1040 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 PHTF1Q9UMS5 762 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 HYOU1Q9Y4L1 999 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 KNTC1P50748 2209 aa13.48□□□□□ -0.25
CLK3-213ENST00000563842 SPAARA0A1B0GVQ0 90 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 POM121BA6NF01 834 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 PJA2O43164 708 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 MAP3K6O95382 1288 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 CPP00450 1065 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ELFN1P0C7U0 828 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 CYP2A6P11509 494 aaPredicted RBP13.47□□□□□ -0.25
CLK3-213ENST00000563842 C6P13671 934 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ITIH2P19823 946 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 PMLP29590 882 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 CETN2P41208 172 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 LIG3P49916 1009 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 THOP1P52888 689 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 HNRNPKP61978 463 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK3-213ENST00000563842 IL9RQ01113 521 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 KIF5AQ12840 1032 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 SLC10A2Q12908 348 aaPredicted RBP13.47□□□□□ -0.25
CLK3-213ENST00000563842 LRRC14Q15048 493 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ST3GAL2Q16842 350 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 HS1BP3Q53T59 392 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ALG1LQ6GMV1 187 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 MFSD7Q6UXD7 560 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 DPPA4Q7L190 304 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ZSWIM9Q86XI8 627 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 EXD1Q8NHP7 514 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 BAHD1Q8TBE0 780 aaPredicted RBP13.47□□□□□ -0.25
CLK3-213ENST00000563842 KIAA1524Q8TCG1 905 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 CENPTQ96BT3 561 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 ANGPTL2Q9UKU9 493 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 PCDHGC4Q9Y5F7 938 aa13.47□□□□□ -0.25
CLK3-213ENST00000563842 SPTY2D1-AS1A0A0U1RR47 76 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 CCDC66A2RUB6 948 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 NEMP2A6NFY4 417 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms