RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RPL26P61254 145 aaKnown RBP16.69■□□□□ 0.26
VPS4A-202ENST00000562754 MTM1Q13496 603 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 CFAP58Q5T655 872 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 FAM46CQ5VWP2 391 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 BRAT1Q6PJG6 821 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 LINC00523Q86TU6 105 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 IFT20Q8IY31 132 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 TSTD1Q8NFU3 115 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 HMGB4Q8WW32 186 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 IFT81Q8WYA0 676 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 IER2Q9BTL4 223 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 POLMQ9NP87 494 aaPredicted RBP16.69■□□□□ 0.26
VPS4A-202ENST00000562754 SERGEFQ9UGK8 458 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 RPL26L1Q9UNX3 145 aaKnown RBP16.69■□□□□ 0.26
VPS4A-202ENST00000562754 SMAPO00193 183 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 NDC80O14777 642 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 AVILO75366 819 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 ALPIP09923 528 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PIRTP0C851 137 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 MYBL2P10244 700 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CTPS1P17812 591 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 C5AR1P21730 350 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 TNFRSF8P28908 595 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 GRIA4P48058 902 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CLCN5P51795 746 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CNTN1Q12860 1018 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CDH17Q12864 832 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 MSLNQ13421 630 aaPredicted RBP16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CUL1Q13616 776 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 ELF2Q15723 593 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 FNBP1LQ5T0N5 605 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PIP5KL1Q5T9C9 394 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 LRRC8BQ6P9F7 803 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 KIAA1324Q6UXG2 1013 aaKnown RBP16.68■□□□□ 0.26
VPS4A-202ENST00000562754 GSPT2Q8IYD1 628 aaKnown RBP16.68■□□□□ 0.26
VPS4A-202ENST00000562754 AGGF1Q8N302 714 aaeCLIP16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PAF1Q8N7H5 531 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 HCAR2Q8TDS4 363 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 RUBCNQ92622 972 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 RMDN1Q96DB5 314 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 SIPA1Q96FS4 1042 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PPP1R16AQ96I34 528 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 ADGRE3Q9BY15 652 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 HDAC8Q9BY41 377 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 EPHX3Q9H6B9 360 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 XAB2Q9HCS7 855 aaKnown RBP16.68■□□□□ 0.26
VPS4A-202ENST00000562754 CD93Q9NPY3 652 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PHTF1Q9UMS5 762 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 PPIL1Q9Y3C6 166 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 SPO11Q9Y5K1 396 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 SCN8AQ9UQD0 1980 aa16.68■□□□□ 0.26
VPS4A-202ENST00000562754 A0A0J9YYE9 177 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 A0A1W2PP55 124 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 A0A1W2PQ67 120 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 CAPN8A6NHC0 703 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ANKRD66B4E2M5 251 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 BANF1O75531 89 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 TRBC1P01850 177 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 DNTTP04053 509 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 MLNP12872 115 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ADRB3P13945 408 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 TPH1P17752 444 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 P2RY2P41231 377 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 TNNT3P45378 269 aaPredicted RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 NEK3P51956 506 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 EPHB1P54762 984 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 SESN2P58004 480 aaPredicted RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 VSNL1P62760 191 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 SEMG2Q02383 582 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 CAV1Q03135 178 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ZBTB16Q05516 673 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 HLTFQ14527 1009 aaKnown RBP eCLIP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 UGP2Q16851 508 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 MSS51Q4VC12 460 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 CERCAMQ5T4B2 595 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 AGBL4Q5VU57 503 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ANO7Q6IWH7 933 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ERN2Q76MJ5 926 aaKnown RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ZCCHC9Q8N567 271 aaKnown RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 TMEM105Q8N8V8 129 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 DNAAF3Q8N9W5 541 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 MDGA1Q8NFP4 955 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 MYRIPQ8NFW9 859 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 FAM131CQ96AQ9 280 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 MCCC1Q96RQ3 725 aaPredicted RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 WDR83Q9BRX9 315 aaKnown RBP16.67■□□□□ 0.26
VPS4A-202ENST00000562754 FAM129AQ9BZQ8 928 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 PCDH12Q9NPG4 1184 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 DYRK4Q9NR20 520 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 NFU1Q9UMS0 254 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 ITM2BQ9Y287 266 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 NUMA1Q14980 2115 aa16.67■□□□□ 0.26
VPS4A-202ENST00000562754 CACNA1IQ9P0X4 2223 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 A0A0U1RQS6 177 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 NPIPB15A6NHN6 443 aaPredicted RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 K7ESF4 209 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 CTIFO43310 598 aaKnown RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 PPFIA2O75334 1257 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 PAPSS2O95340 614 aaPredicted RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 MGAT1P26572 445 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms