RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CAMK1DQ8IU85 385 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 LSMEM2Q8N112 164 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 ARFGAP1Q8N6T3 406 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 ANKRD20A12PQ8NF67 263 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TSACCQ96A04 125 aaPredicted RBP11.74□□□□□ -0.53
USP3-220ENST00000561381 VCPIP1Q96JH7 1222 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 PEBP4Q96S96 227 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 SYT11Q9BT88 431 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 C1QTNF7Q9BXJ2 289 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TRIM7Q9C029 511 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 SLC39A8Q9C0K1 460 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 SUV39H2Q9H5I1 410 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 CPNE5Q9HCH3 593 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 ANO10Q9NW15 660 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 NCKIPSDQ9NZQ3 722 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 SIRPGQ9P1W8 387 aa11.74□□□□□ -0.53
USP3-220ENST00000561381 TSPAN11A1L157 253 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 FGF10O15520 208 aaPredicted RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 TEX33O43247 280 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PRAMEF11O60813 436 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PCCBP05166 539 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PSMA2P25787 234 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PAPOLAP51003 745 aaKnown RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 HK3P52790 923 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PDX1P52945 283 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 AIF1P55008 147 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 ERVPABLB-1P60509 514 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 MAMLD1Q13495 774 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 INPP5AQ14642 412 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 LRRC14Q15048 493 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 STX1AQ16623 288 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 ALG11Q2TAA5 492 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 ENPP7Q6UWV6 458 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 RBM44Q6ZP01 1051 aaKnown RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 ARHGAP36Q6ZRI8 547 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 RD3Q7Z3Z2 195 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 HID1Q8IV36 788 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 TSEN2Q8NCE0 465 aaKnown RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 PCDH19Q8TAB3 1148 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PRR11Q96HE9 360 aaPredicted RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 TBATAQ96M53 351 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 KCTD15Q96SI1 283 aaPredicted RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 CCDC3Q9BQI4 270 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP3-220ENST00000561381 DHX35Q9H5Z1 703 aaKnown RBP11.73□□□□□ -0.53
USP3-220ENST00000561381 SYNDIG1Q9H7V2 258 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 GULP1Q9UBP9 304 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PCSK1NQ9UHG2 260 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 PADI4Q9UM07 663 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 AP4E1Q9UPM8 1137 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 OR1A2Q9Y585 309 aa11.73□□□□□ -0.53
USP3-220ENST00000561381 MGAQ8IWI9 3026 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 TEX51A0A1B0GUA7 166 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 EEF2KO00418 725 aaKnown RBP11.72□□□□□ -0.53
USP3-220ENST00000561381 TOR1BO14657 336 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 KLK10O43240 276 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ZIC2O95409 532 aaPredicted RBP11.72□□□□□ -0.53
USP3-220ENST00000561381 FERP16591 822 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 TNFAIP3P21580 790 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 MMP12P39900 470 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 RPIAP49247 311 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 LIG3P49916 1009 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 NDST2P52849 883 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ELP6Q0PNE2 266 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 C19orf57Q0VDD7 668 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 NFATC4Q14934 902 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ARHGAP40Q5TG30 622 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 FOXR1Q6PIV2 292 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 CYP4V2Q6ZWL3 525 aaPredicted RBP11.72□□□□□ -0.53
USP3-220ENST00000561381 ARHGAP12Q8IWW6 846 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 TP53INP2Q8IXH6 220 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 AOPEPQ8N6M6 819 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 NPWQ8N729 165 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 KYQ8NBH2 561 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 PLA2G15Q8NCC3 412 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 TPCN2Q8NHX9 752 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 HCAR2Q8TDS4 363 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 KCNE4Q8WWG9 221 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 GLMNQ92990 594 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 NAT6Q93015 286 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 NSMCE3Q96MG7 304 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ZNF641Q96N77 438 aaPredicted RBP11.72□□□□□ -0.53
USP3-220ENST00000561381 SLC46A1Q96NT5 459 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 APOOQ9BUR5 198 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 SNRNP25Q9BV90 132 aaKnown RBP11.72□□□□□ -0.53
USP3-220ENST00000561381 THSD1Q9NS62 852 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 DOLKQ9UPQ8 538 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ATP8A1Q9Y2Q0 1164 aa11.72□□□□□ -0.53
USP3-220ENST00000561381 ANKRD36A6QL64 1941 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 LRP4O75096 1905 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 ARHGAP42A6NI28 874 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 DFFAO00273 331 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 TCEA3O75764 348 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 PALMO75781 387 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 RASGRP1O95267 797 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 CTSEP14091 401 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 ERCC2P18074 760 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 RBMS1P29558 406 aaKnown RBP11.71□□□□□ -0.53
USP3-220ENST00000561381 PEX5P50542 639 aa11.71□□□□□ -0.53
USP3-220ENST00000561381 SUOXP51687 545 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms