RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RBBP7Q16576 425 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 BEND6Q5SZJ8 279 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 TMC3Q7Z5M5 1100 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 TMPRSS6Q8IU80 811 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SLC41A1Q8IVJ1 513 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 RAB3IL1Q8TBN0 382 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 NTAN1Q96AB6 310 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ESAMQ96AP7 390 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 AP2M1Q96CW1 435 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 MED8Q96G25 268 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 TEKT5Q96M29 485 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ACOX2Q99424 681 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 HEPHQ9BQS7 1158 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ECT2Q9H8V3 914 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 DZANK1Q9NVP4 752 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 WHRNQ9P202 907 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 GULP1Q9UBP9 304 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CYP8B1Q9UNU6 501 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF510Q9Y2H8 683 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CFAP20Q9Y6A4 193 aaKnown RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 FFAR2O15552 330 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 LEFTY1O75610 366 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CDK14O94921 469 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 GMPRP36959 345 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 DHPSP49366 369 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 MGAT5Q09328 741 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CCDC15Q0P6D6 951 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ABRQ12979 859 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 HNRNPDQ14103 355 aaKnown RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SETDB1Q15047 1291 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PKDCCQ504Y2 493 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PM20D1Q6GTS8 502 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ANGPTL8Q6UXH0 198 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CHST15Q7LFX5 561 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 LYSMD3Q7Z3D4 306 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ZDHHC14Q8IZN3 488 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SIX5Q8N196 739 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ANKS4BQ8N8V4 417 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PIP4K2CQ8TBX8 421 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 FAM71BQ8TC56 605 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PRCCQ92733 491 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 FGF14Q92915 247 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 MYEOVQ96EZ4 313 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PPP1R16AQ96I34 528 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF778Q96MU6 729 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 QKIQ96PU8 341 aaKnown RBP eCLIP5.48□□□□□ -1.538e-9■■■■■ 75.5
VPS13C-209ENST00000560637 MYADMQ96S97 322 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 AGAP2Q99490 1192 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PRMT1Q99873 361 aaKnown RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SYT11Q9BT88 431 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SLC7A5P2Q9GIP4 190 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CSNK1G1Q9HCP0 422 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 HHLA1C9JL84 531 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TNFRSF10BO14763 440 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 RIPK2O43353 540 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 LATO43561 262 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PPFIA2O75334 1257 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ABLIM3O94929 683 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 F11P03951 625 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 DLDP09622 509 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TROVE2P10155 538 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 STMN1P16949 149 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MAOBP27338 520 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 HLA-FP30511 346 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CD151P48509 253 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 OCRLQ01968 901 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 HYAL1Q12794 435 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 DNAJC3Q13217 504 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CCDC6Q16204 474 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SPDYAQ5MJ70 313 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF648Q5T619 568 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 DUPD1Q68J44 220 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 LVRNQ6Q4G3 990 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 Q6ZVL8 140 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MICALCLQ6ZW33 695 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TRMT10CQ7L0Y3 403 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SPNS2Q8IVW8 549 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SYTL1Q8IYJ3 562 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 HHIPQ96QV1 700 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 UHRF1Q96T88 793 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 VAT1Q99536 393 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 OSBPL2Q9H1P3 480 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 UBE2ZQ9H832 354 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ZDHHC7Q9NXF8 308 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TCRBV9S1A1TA0A576 114 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ILVBLA1L0T0 632 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 EBAG9O00559 213 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 VPS26AO75436 327 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MTA2O94776 668 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PRAMEF1O95521 474 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PYGLP06737 847 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 FAM163BP0C2L3 166 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PRSS56P0CW18 603 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CHN1P15882 459 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 LPOP22079 712 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CCNCP24863 283 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MAPKAPK2P49137 400 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NME5P56597 212 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 IL10RBQ08334 325 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 XRCC4Q13426 336 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms