RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 TSC1Q92574 1164 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 TSACCQ96A04 125 aaPredicted RBP12.61□□□□□ -0.39
SMAD3-208ENST00000558827 LENG8Q96PV6 779 aaPredicted RBP12.61□□□□□ -0.39
SMAD3-208ENST00000558827 DNAJC7Q99615 494 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 NHEJ1Q9H9Q4 299 aaPredicted RBP12.61□□□□□ -0.39
SMAD3-208ENST00000558827 NOD2Q9HC29 1040 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 NT5MQ9NPB1 228 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 SCUBE2Q9NQ36 999 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 ABHD10Q9NUJ1 306 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 ATP8A1Q9Y2Q0 1164 aa12.61□□□□□ -0.39
SMAD3-208ENST00000558827 ANKRD11Q6UB99 2663 aaPredicted RBP12.61□□□□□ -0.39
SMAD3-208ENST00000558827 MYLKQ15746 1914 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CPED1A4D0V7 1026 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 SRRM3A6NNA2 597 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 K7ESM1 405 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CASC3O15234 703 aaKnown RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 MFAP3LO75121 409 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CSF2P04141 144 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CTPS1P17812 591 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CSNK1DP48730 415 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ARSEP51690 589 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ZNF135P52742 658 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ELP6Q0PNE2 266 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ZNF211Q13398 564 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 LRRC14Q15048 493 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 LLGL1Q15334 1064 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 HS1BP3Q53T59 392 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 HES3Q5TGS1 186 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 KCTD16Q68DU8 428 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CRTC1Q6UUV9 634 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 B4GALNT4Q76KP1 1039 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 PARGQ86W56 976 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 HID1Q8IV36 788 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ZNF548Q8NEK5 533 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 OR4C6Q8NH72 309 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 SLC35G2Q8TBE7 412 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 RAPGEF5Q92565 580 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 APOLD1Q96LR9 279 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CCDC42Q96M95 316 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 ZNF641Q96N77 438 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 TRIM5Q9C035 493 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 CCDC86Q9H6F5 360 aaKnown RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 SUDS3Q9H7L9 328 aaPredicted RBP12.6□□□□□ -0.39
SMAD3-208ENST00000558827 TFR2Q9UP52 801 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 TTLL3Q9Y4R7 772 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 OR1A2Q9Y585 309 aa12.6□□□□□ -0.39
SMAD3-208ENST00000558827 URB1O60287 2271 aaKnown RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ASPMQ8IZT6 3477 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 TSPAN11A1L157 253 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 GCATO75600 419 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 NME1P15531 152 aaKnown RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 MMP12P39900 470 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 MMP13P45452 471 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 HNRNPKP61978 463 aaKnown RBP eCLIP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 GBE1Q04446 702 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 TRAF2Q12933 501 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 RALGDSQ12967 914 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 TARDBPQ13148 414 aaKnown RBP eCLIP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 TRIM14Q14142 442 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 INPP5AQ14642 412 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 RFTN1Q14699 578 aaPredicted RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 GRM3Q14832 879 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ACOX1Q15067 660 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 SMAD1Q15797 465 aaKnown RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 CDKN3Q16667 212 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ANKRD20A8PQ5CZ79 823 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 PRRT3Q5FWE3 981 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 MARC1Q5VT66 337 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 NCBP2-AS2Q69YL0 99 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 BRAT1Q6PJG6 821 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 C19orf48Q6RUI8 117 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ENPP7Q6UWV6 458 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 DCP2Q8IU60 420 aaKnown RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 PHACTR4Q8IZ21 702 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 PELI3Q8N2H9 469 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 GALNT15Q8N3T1 639 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 DENND6BQ8NEG7 585 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 NSMCE1Q8WV22 266 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ASB12Q8WXK4 309 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 FUBP1Q96AE4 644 aaKnown RBP12.59□□□□□ -0.39
SMAD3-208ENST00000558827 PSKH2Q96QS6 385 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 TUBGCP5Q96RT8 1024 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 APOOQ9BUR5 198 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 C1QTNF7Q9BXJ2 289 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 GPR27Q9NS67 375 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 UVRAGQ9P2Y5 699 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 B4GALT6Q9UBX8 382 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 ZZEF1O43149 2961 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 DMXL2Q8TDJ6 3036 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 PKD1L2Q7Z442 2459 aa12.59□□□□□ -0.39
SMAD3-208ENST00000558827 CHD6Q8TD26 2715 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 SSU72P8A0A1W2PR75 194 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 GOLGA6CA6NDK9 693 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 GOLGA6BA6NDN3 693 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 AKR1B15C9JRZ8 316 aaPredicted RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 TRAFD1O14545 582 aaPredicted RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 AQP9O43315 295 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 RECQL5O94762 991 aaPredicted RBP12.58□□□□□ -0.4
SMAD3-208ENST00000558827 TMEM253P0C7T8 217 aa12.58□□□□□ -0.4
SMAD3-208ENST00000558827 ELFN1P0C7U0 828 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms