RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PRCCQ92733 491 aaPredicted RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 ART4Q93070 314 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PBXIP1Q96AQ6 731 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ARRDC3Q96B67 414 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 RMDN1Q96DB5 314 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SIPA1Q96FS4 1042 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PPP1R16AQ96I34 528 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MRGPRX1Q96LB2 322 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 HHIPQ96QV1 700 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 TRIB3Q96RU7 358 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ADGRE3Q9BY15 652 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 DYRK4Q9NR20 520 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 FAM114A2Q9NRY5 505 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PIH1D1Q9NWS0 290 aaKnown RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 GRHL1Q9NZI5 618 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 DLGAP2Q9P1A6 1054 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 BCCIPQ9P287 314 aaKnown RBP eCLIP9.68□□□□□ -0.86
CUX1-216ENST00000558469 PCDHGA4Q9Y5G9 962 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 CACNA1IQ9P0X4 2223 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MUC3AQ02505 3323 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PLXND1Q9Y4D7 1925 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 KMT2EQ8IZD2 1858 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 NUMA1Q14980 2115 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 TRPM6Q9BX84 2022 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 A0A1W2PQ67 120 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ANKRD66B4E2M5 251 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 TNFRSF10AO00220 468 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 NDC80O14777 642 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 TP73O15350 636 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 FZD6O60353 706 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 AVILO75366 819 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ALDH1A2O94788 518 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 NDST3O95803 873 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 EPOP01588 193 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 DNTTP04053 509 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 PRKCGP05129 697 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 NUDT7P0C024 238 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ACADMP11310 421 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 TPH1P17752 444 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 CTPS1P17812 591 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 NDUFV2P19404 249 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 HLA-DPA1P20036 260 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 C5AR1P21730 350 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 XPAP23025 273 aaPredicted RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 GRIA1P42261 906 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 CLCN5P51795 746 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 PLTPP55058 493 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 RPL26P61254 145 aaKnown RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 POLR2LP62875 67 aaKnown RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 CAV1Q03135 178 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 CNTN1Q12860 1018 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 CDH17Q12864 832 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 MTM1Q13496 603 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 NAA30Q147X3 362 aaPredicted RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 LRRC73Q5JTD7 316 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 DENND5AQ6IQ26 1287 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 FBXL19Q6PCT2 694 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 BRAT1Q6PJG6 821 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 KIAA1324Q6UXG2 1013 aaKnown RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 PARS2Q7L3T8 475 aaKnown RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 AADATQ8N5Z0 425 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 TSTD1Q8NFU3 115 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 HCAR2Q8TDS4 363 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 GANCQ8TET4 914 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ECHDC3Q96DC8 303 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 SMIM14Q96QK8 99 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 OMDQ99983 421 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 IER2Q9BTL4 223 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 EPHX3Q9H6B9 360 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ANKZF1Q9H8Y5 726 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 ARNT2Q9HBZ2 717 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 GDF3Q9NR23 364 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 SPATA6Q9NWH7 488 aaPredicted RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 DKK3Q9UBP4 350 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 PHTF1Q9UMS5 762 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 RPL26L1Q9UNX3 145 aaKnown RBP9.67□□□□□ -0.86
CUX1-216ENST00000558469 SHOC2Q9UQ13 582 aa9.67□□□□□ -0.86
CUX1-216ENST00000558469 PLXNA2O75051 1894 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ZNF106Q9H2Y7 1883 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 A0A1W2PP55 124 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 TSPAN11A1L157 253 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 A8MX80 341 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 UPK3BL1B0FP48 263 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 UPK3BL2E5RIL1 263 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 SMAPO00193 183 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 RNASEH2AO75792 299 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 FGF1P05230 155 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ALPIP09923 528 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ATXN1LP0C7T5 689 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 PIRTP0C851 137 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ADRB3P13945 408 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 TIMP2P16035 220 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 DRD3P35462 400 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 P2RY2P41231 377 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ABL2P42684 1182 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 GRIA4P48058 902 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 CXCL12P48061 93 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 CARSP49589 748 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 CCR3P51677 355 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 SESN2P58004 480 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms