RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 EDEM2Q9BV94 578 aa13.69□□□□□ -0.22
SHMT2-228ENST00000557302 CARD9Q9H257 536 aa13.69□□□□□ -0.22
SHMT2-228ENST00000557302 ZFR2Q9UPR6 939 aaKnown RBP13.69□□□□□ -0.22
SHMT2-228ENST00000557302 PCDHB9Q9Y5E1 797 aa13.69□□□□□ -0.22
SHMT2-228ENST00000557302 RAI2Q9Y5P3 530 aa13.69□□□□□ -0.22
SHMT2-228ENST00000557302 LAMA1P25391 3075 aa13.69□□□□□ -0.22
SHMT2-228ENST00000557302 CEP250Q9BV73 2442 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 IGLON5A6NGN9 336 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 PRAMEF26H0Y7S4 382 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 KCNK3O14649 394 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 RIOK3O14730 519 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 SLC31A1O15431 190 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 PGLSO95336 258 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 ENGP17813 658 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 ITIH2P19823 946 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 NFKBIAP25963 317 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 AKT2P31751 481 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 CD86P42081 329 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 CSNK1EP49674 416 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 EIF3EP60228 445 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 FAM193AP78312 1265 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 ARHGAP8P85298 464 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 SGCGQ13326 291 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 TMEM52BQ4KMG9 183 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 ARMC12Q5T9G4 340 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 TEKT5Q96M29 485 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 VAT1Q99536 393 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 FAM118BQ9BPY3 351 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 WRAP53Q9BUR4 548 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 TDRD1Q9BXT4 1180 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 SLC17A9Q9BYT1 436 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 SLC25A51Q9H1U9 297 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 FSCN3Q9NQT6 498 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 RXFP3Q9NSD7 469 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 TRMT1Q9NXH9 659 aaKnown RBP13.68□□□□□ -0.22
SHMT2-228ENST00000557302 PHTF1Q9UMS5 762 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 CACNA1EQ15878 2313 aa13.68□□□□□ -0.22
SHMT2-228ENST00000557302 PI4KAP42356 2102 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 A0A1B0GVT2 93 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 ARHGAP33O14559 1287 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 GDF9O60383 454 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 MMP20O60882 483 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 ZNF189O75820 626 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 PRKCGP05129 697 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 RBP3P10745 1247 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 HNRNPA2B1P22626 353 aaKnown RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 RBL1P28749 1068 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 CD38P28907 300 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 MMP12P39900 470 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 C21orf59P57076 290 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 WASHC5Q12768 1159 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 GRIK2Q13002 908 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 KLF1Q13351 362 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 STAT4Q14765 748 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 FAM182AQ5T1J6 154 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 DARS2Q6PI48 645 aaKnown RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 DPPA4Q7L190 304 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 ASB12Q8WXK4 309 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 SKA1Q96BD8 255 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 MYOCQ99972 504 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 GTPBP2Q9BX10 602 aaKnown RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 C1QTNF2Q9BXJ5 285 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 TLR10Q9BXR5 811 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 GLOD4Q9HC38 313 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 KLHL8Q9P2G9 620 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-228ENST00000557302 DNAH14Q0VDD8 3507 aa13.67□□□□□ -0.22
SHMT2-228ENST00000557302 A0A1W2PR77 199 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 WNT9AO14904 365 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 VILLO15195 856 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 KIF5CO60282 957 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 FZD6O60353 706 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 TM7SF2O76062 418 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 STK10O94804 968 aaKnown RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 PAK4O96013 591 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 MMP2P08253 660 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 CYP2A6P11509 494 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 MSNP26038 577 aaKnown RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 LIG3P49916 1009 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 EPHB1P54762 984 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 RPL26P61254 145 aaKnown RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 SKOR1P84550 965 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 SEMG2Q02383 582 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 FGL2Q14314 439 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 IHHQ14623 411 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 IL27RAQ6UWB1 636 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 LAYNQ6UX15 382 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 USP45Q70EL2 814 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 SLC13A5Q86YT5 568 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 NDUFAF2Q8N183 169 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 ZNF567Q8N184 647 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 TMEM145Q8NBT3 493 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 NETO1Q8TDF5 533 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 PIH1D2Q8WWB5 315 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 IMP4Q96G21 291 aaKnown RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 RBM15Q96T37 977 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 C1QTNF7Q9BXJ2 289 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 C10orf88Q9H8K7 445 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms