RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 COMPP49747 757 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 PLCB4Q15147 1175 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ZNF585BQ52M93 769 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 EFHC1Q5JVL4 640 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 FAM69BQ5VUD6 431 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 TYW3Q6IPR3 259 aaKnown RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 INO80CQ6PI98 192 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 ARMC8Q8IUR7 673 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 NAXEQ8NCW5 288 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 FBXL8Q96CD0 374 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 MED30Q96HR3 178 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 NR1H4Q96RI1 486 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 PLEKHA4Q9H4M7 779 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 BRF2Q9HAW0 419 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 CISD1Q9NZ45 108 aaKnown RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 NAALADL1Q9UQQ1 740 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 NFE2L3Q9Y4A8 694 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 SCINQ9Y6U3 715 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 TRIP12Q14669 1992 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-221ENST00000556534 KDM3AQ9Y4C1 1321 aa4.7□□□□□ -1.66
SCFD1-221ENST00000556534 C4orf47A7E2U8 309 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 SERPINI2O75830 405 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 CH25HO95992 272 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 TFP02787 698 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 PRSS2P07478 247 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 FCGR1AP12314 374 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 PDLIM4P50479 330 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 DSCR9P59020 149 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 HIST2H2ACQ16777 129 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-221ENST00000556534 JAKMIP3Q5VZ66 844 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 ZNF324BQ6AW86 544 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-221ENST00000556534 KIAA1161Q6NSJ0 714 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 KLHL24Q6TFL4 600 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 DLK2Q6UY11 383 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 SHFQ7M4L6 423 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 TDRPQ86YL5 185 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 SLC35F3Q8IY50 421 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 CADM4Q8NFZ8 388 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 ADAMTS15Q8TE58 950 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 TMED6Q8WW62 240 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 PABPC5Q96DU9 382 aaKnown RBP4.69□□□□□ -1.66
SCFD1-221ENST00000556534 NAF1Q96HR8 494 aaKnown RBP4.69□□□□□ -1.66
SCFD1-221ENST00000556534 SEC62Q99442 399 aaKnown RBP4.69□□□□□ -1.66
SCFD1-221ENST00000556534 USP44Q9H0E7 712 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 JMJD4Q9H9V9 463 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 ZNF580Q9UK33 172 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 A4GNTQ9UNA3 340 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 CAMK2AQ9UQM7 478 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 FAM96BQ9Y3D0 163 aa4.69□□□□□ -1.66
SCFD1-221ENST00000556534 A0A0U1RQJ8 604 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 SRRM3A6NNA2 597 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-221ENST00000556534 HSPA12AO43301 675 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 MMP2P08253 660 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 SHMT1P34896 483 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 HARS2P49590 506 aaKnown RBP4.68□□□□□ -1.66
SCFD1-221ENST00000556534 KIF5AQ12840 1032 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 TRAF2Q12933 501 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 KEAP1Q14145 624 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 PPP2R5BQ15173 497 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 EFNB3Q15768 340 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 HLFQ16534 295 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 TCTN1Q2MV58 587 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 ALG11Q2TAA5 492 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 MMEL1Q495T6 779 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 SETMARQ53H47 684 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-221ENST00000556534 SGO1Q5FBB7 561 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 HIST2H2BCQ6DN03 193 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 HIST2H2BDQ6DRA6 164 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 LCTLQ6UWM7 567 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 QSOX2Q6ZRP7 698 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 SLC46A3Q7Z3Q1 461 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 ADHFE1Q8IWW8 467 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 PCYOX1LQ8NBM8 494 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 LRFN5Q96NI6 719 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 MEIS3Q99687 375 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 TKTL2Q9H0I9 626 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 IL25Q9H293 177 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 ESRP2Q9H6T0 727 aaKnown RBP4.68□□□□□ -1.66
SCFD1-221ENST00000556534 MAGEE1Q9HCI5 957 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 PREBQ9HCU5 417 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 PAM16Q9Y3D7 125 aa4.68□□□□□ -1.66
SCFD1-221ENST00000556534 CPED1A4D0V7 1026 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 SEC31AO94979 1220 aaKnown RBP4.67□□□□□ -1.66
SCFD1-221ENST00000556534 PPP1R3DO95685 299 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 IRF1P10914 325 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 CCKBRP32239 447 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 GABRB2P47870 512 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 SEC61A1P61619 476 aaKnown RBP4.67□□□□□ -1.66
SCFD1-221ENST00000556534 NEXNQ0ZGT2 675 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 DHX34Q14147 1143 aaKnown RBP4.67□□□□□ -1.66
SCFD1-221ENST00000556534 NFATC4Q14934 902 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 RUSC1-AS1Q66K80 236 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 ANKRD54Q6NXT1 300 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 CRELD2Q6UXH1 353 aaPredicted RBP4.67□□□□□ -1.66
SCFD1-221ENST00000556534 CREB3L2Q70SY1 520 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 MTSS1LQ765P7 747 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 NUDCD2Q8WVJ2 157 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 FIZ1Q96SL8 496 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 H2AFJQ9BTM1 129 aa4.67□□□□□ -1.66
SCFD1-221ENST00000556534 OCIAD1Q9NX40 245 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms