RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 EPB41L5Q9HCM4 733 aa10.19□□□□□ -0.78
SCFD1-220ENST00000556486 ANLNQ9NQW6 1124 aa10.19□□□□□ -0.78
SCFD1-220ENST00000556486 PIGVQ9NUD9 493 aa10.19□□□□□ -0.78
SCFD1-220ENST00000556486 ZNF212Q9UDV6 495 aa10.19□□□□□ -0.78
SCFD1-220ENST00000556486 ATXN7L1Q9ULK2 861 aaPredicted RBP10.19□□□□□ -0.78
SCFD1-220ENST00000556486 AHCTF1Q8WYP5 2266 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 POM121BA6NF01 834 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 M0QYT0 321 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 KPNA3O00505 521 aaPredicted RBP10.18□□□□□ -0.78
SCFD1-220ENST00000556486 NOBOXO60393 691 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ZNF821O75541 412 aaPredicted RBP10.18□□□□□ -0.78
SCFD1-220ENST00000556486 GRAP2O75791 330 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 PCDH8O95206 1070 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 GJB6O95452 261 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ADCY5O95622 1261 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 MT-CO1P00395 513 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 PRNPP04156 253 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 NTRK1P04629 796 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 CTSLP07711 333 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 GP1BBP13224 206 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 WT1P19544 449 aaPredicted RBP10.18□□□□□ -0.78
SCFD1-220ENST00000556486 AKT2P31751 481 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 CHRNA3P32297 505 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 KRT9P35527 623 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 BPIFB4P59827 614 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 APBA1Q02410 837 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 NME3Q13232 169 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 C1orf61Q13536 156 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 FZD2Q14332 565 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 CLCA4Q14CN2 919 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ARHGAP44Q17R89 818 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 SLC25A52Q3SY17 297 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ALFQ53S48 1182 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 DPY19L2P1Q6NXN4 242 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ABI3BPQ7Z7G0 1075 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 SLC47A2Q86VL8 602 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ZSCAN30Q86W11 494 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 HORMAD1Q86X24 394 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 PASD1Q8IV76 773 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 RBFAQ8N0V3 343 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 MLKLQ8NB16 471 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 WDR36Q8NI36 951 aaKnown RBP10.18□□□□□ -0.78
SCFD1-220ENST00000556486 LMX1AQ8TE12 382 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 TKTL2Q9H0I9 626 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 WDCPQ9H6R7 721 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 VPS51Q9UID3 782 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 STAP1Q9ULZ2 295 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 ZFR2Q9UPR6 939 aaKnown RBP10.18□□□□□ -0.78
SCFD1-220ENST00000556486 LRRK2Q5S007 2527 aa10.18□□□□□ -0.78
SCFD1-220ENST00000556486 SYNJ2BP-COX16A0A087WUM0 186 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ILVBLA1L0T0 632 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 NEMP2A6NFY4 417 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 TTLL8A6PVC2 850 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 FOXN3O00409 490 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 RAD51BO15315 384 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ZMPSTE24O75844 475 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 CNTN5O94779 1100 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ACPPP15309 386 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 TFE3P19532 575 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 HNRNPA2B1P22626 353 aaKnown RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 USP8P40818 1118 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 SLC20A2Q08357 652 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 TBR1Q16650 682 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 MAN2A1Q16706 1144 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ZCCHC8Q6NZY4 707 aaKnown RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 MRPL14Q6P1L8 145 aaKnown RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 IGF2-ASQ6U949 168 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ERN2Q76MJ5 926 aaKnown RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 CLEC14AQ86T13 490 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 DCP2Q8IU60 420 aaKnown RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ATP11CQ8NB49 1132 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 TMEM35BQ8NCS4 154 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 GRIN3AQ8TCU5 1115 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 JPH3Q8WXH2 748 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 HAPLN3Q96S86 360 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 CCDC3Q9BQI4 270 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 MUC3BQ9H195 1237 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 EPN3Q9H201 632 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 RETREG1Q9H6L5 497 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 USP29Q9HBJ7 922 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 COX16Q9P0S2 106 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 ZFATQ9P243 1243 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 DNAJC12Q9UKB3 198 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 AJAP1Q9UKB5 411 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-220ENST00000556486 DYRK1BQ9Y463 629 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 PCDHGA8Q9Y5G5 932 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 MYO9AB2RTY4 2548 aa10.17□□□□□ -0.78
SCFD1-220ENST00000556486 TRPM6Q9BX84 2022 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 DOCK4Q8N1I0 1966 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 SCN8AQ9UQD0 1980 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 CCDC187A0A096LP49 1063 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 A0A0D9SEW6 157 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 A6NNZ2 444 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 K7ERQ8 282 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 SMAD7O15105 426 aaKnown RBP10.16□□□□□ -0.78
SCFD1-220ENST00000556486 AQP9O43315 295 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 SMAD6O43541 496 aaKnown RBP10.16□□□□□ -0.78
SCFD1-220ENST00000556486 AP1G1O43747 822 aa10.16□□□□□ -0.78
SCFD1-220ENST00000556486 SNAP91O60641 907 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms