RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 XPAP23025 273 aaPredicted RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 DGKAP23743 735 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 KDELR1P24390 212 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 IGFALSP35858 605 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 MMP12P39900 470 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 GARSP41250 739 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 RABIFP47224 123 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 LIG3P49916 1009 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 HADHBP55084 474 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 MAXP61244 160 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 SEMG2Q02383 582 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 GBE1Q04446 702 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 ELP6Q0PNE2 266 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC10A2Q12908 348 aaPredicted RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 RALGDSQ12967 914 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 IHHQ14623 411 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 AGERQ15109 404 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 INAVAQ3KP66 663 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 LRRC38Q5VT99 294 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 PTAR1Q7Z6K3 402 aaPredicted RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 MAP7D3Q8IWC1 876 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 EID2Q8N6I1 236 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 MAML1Q92585 1016 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 GATA6Q92908 595 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 FATE1Q969F0 183 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 IFT43Q96FT9 208 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 TSGA13Q96PP4 275 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 RNF157Q96PX1 679 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 NUDCD1Q96RS6 583 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 NOD2Q9HC29 1040 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 UCKL1Q9NWZ5 548 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 KLF15Q9UIH9 416 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 APOBEC2Q9Y235 224 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 ATP8A1Q9Y2Q0 1164 aa10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 SMG1Q96Q15 3661 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 ASH1LQ9NR48 2969 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-206ENST00000553437 WDFY3Q8IZQ1 3526 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CABIN1Q9Y6J0 2220 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 FREM2Q5SZK8 3169 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CFAP69A5D8W1 941 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF487B1APH4 448 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 TRIM38O00635 465 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MATN3O15232 486 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PIAS2O75928 621 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MAP3K6O95382 1288 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 LDOC1O95751 146 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CSF2P04141 144 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 C6P13671 934 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 GM2AP17900 193 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 COMTP21964 271 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC1A1P43005 524 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MAGEA1P43355 309 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MMP13P45452 471 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 TRAF2Q12933 501 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 EIF2B5Q13144 721 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PDE1CQ14123 709 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF235Q14590 738 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 WSCD2Q2TBF2 565 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PROX2Q3B8N5 592 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF542PQ5EBM4 170 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 RALGPS1Q5JS13 557 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CFAP58Q5T655 872 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MARC1Q5VT66 337 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 ERAP2Q6P179 960 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 DPPA4Q7L190 304 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 VSIG1Q86XK7 387 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CCDC170Q8IYT3 715 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PLD5Q8N7P1 536 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 LRRN4Q8WUT4 740 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 CNDP2Q96KP4 475 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PANX2Q96RD6 677 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 DTLQ9NZJ0 730 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 FTSJ1Q9UET6 329 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PNMA8BQ9ULN7 279 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 TFR2Q9UP52 801 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 COQ6Q9Y2Z9 468 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MSRB2Q9Y3D2 182 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 HYOU1Q9Y4L1 999 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PCDHGC4Q9Y5F7 938 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 PCDHA13Q9Y5I0 950 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 AKAP13Q12802 2813 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 MAST4O15021 2626 aa10.34□□□□□ -0.75
CCDC88C-206ENST00000553437 LRRD1A4D1F6 860 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 GOLGA8CPA6NN73 597 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 C1QTNF9BB2RNN3 333 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 TOR1BO14657 336 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 ENC1O14682 589 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 SIGLEC6O43699 453 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 SOCS5O75159 536 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 C1QTNF9P0C862 333 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 NME1P15531 152 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 CCNCP24863 283 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 YPEL5P62699 121 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 POLR2LP62875 67 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 DNAJC3Q13217 504 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 ZNF211Q13398 564 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 LRRC14Q15048 493 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 IRF4Q15306 451 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 TAZQ16635 292 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms