RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 STX1BP61266 288 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 SOX4Q06945 474 aaPredicted RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 GALNT1Q10472 559 aaPredicted RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 EML3Q32P44 896 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 BTBD8Q5XKL5 378 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 CCDC117Q8IWD4 279 aaPredicted RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 SNX31Q8N9S9 440 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 OR9I1Q8NGQ6 314 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ISOC1Q96CN7 298 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 FCRL5Q96RD9 977 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 RHOBTB2Q9BYZ6 727 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 CNGB3Q9NQW8 809 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ZNHIT2Q9UHR6 403 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 TRAF6Q9Y4K3 522 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 SH3PXD2BA1X283 911 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 TRIM64CA6NLI5 447 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 RBP1P09455 135 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 NME5P56597 212 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 INTS11Q5TA45 600 aaKnown RBP17.65■□□□□ 0.42
SYNE3-202ENST00000553340 DENND5AQ6IQ26 1287 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF280DQ6N043 979 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 RPS27LQ71UM5 84 aaKnown RBP17.65■□□□□ 0.42
SYNE3-202ENST00000553340 ZUFSPQ96AP4 578 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 SLC39A3Q9BRY0 314 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 CCM2LQ9NUG4 571 aaPredicted RBP17.65■□□□□ 0.42
SYNE3-202ENST00000553340 ARHGEF38Q9NXL2 777 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 TLL2Q9Y6L7 1015 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 PAPPA2Q9BXP8 1791 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 UNCXA6NJT0 531 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 SAC3D1A6NKF1 404 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 LTA4HP09960 611 aaKnown RBP17.65■□□□□ 0.42
SYNE3-202ENST00000553340 KCNE1P15382 129 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 ATP6V1B2P21281 511 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 ATP4BP51164 291 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 PLK1P53350 603 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 RABGGTBP53611 331 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 GPR180Q86V85 440 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 SLC22A9Q8IVM8 553 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 CBR4Q8N4T8 237 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 SHCBP1Q8NEM2 672 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 PHF21BQ96EK2 531 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 OSMRQ99650 979 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 TRIM15Q9C019 465 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 TBCCD1Q9NVR7 557 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 EBF1Q9UH73 591 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 AURKCQ9UQB9 309 aa17.65■□□□□ 0.42
SYNE3-202ENST00000553340 DFFAO00273 331 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 USP17L7P0C7H9 530 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 MYF6P23409 242 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 CCNCP24863 283 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 ENTPD1P49961 510 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 PITRM1Q5JRX3 1037 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 TBCELQ5QJ74 424 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 RBM20Q5T481 1227 aaKnown RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 KIAA0930Q6ICG6 404 aaPredicted RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 NEPROQ6NW34 567 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 DCLRE1AQ6PJP8 1040 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 ADAMTS16Q8TE57 1224 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 SNRNP27Q8WVK2 155 aaKnown RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 EMID1Q96A84 441 aaPredicted RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 ELP3Q9H9T3 547 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 GLOD4Q9HC38 313 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 TREX1Q9NSU2 369 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 SMOXQ9NWM0 555 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 PDCD11Q14690 1871 aaKnown RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 TANC1Q9C0D5 1861 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 YWHAQP27348 245 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 RPL10P27635 214 aaKnown RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 CXCR3P49682 368 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 GEMP55040 296 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 WSCD1Q658N2 575 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 KIAA0408Q6ZU52 694 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 LARP4Q71RC2 724 aaKnown RBP eCLIP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 C12orf43Q96C57 262 aaKnown RBP17.64■□□□□ 0.41
SYNE3-202ENST00000553340 ADI1Q9BV57 179 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 ENTPD7Q9NQZ7 604 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 FAIMQ9NVQ4 179 aa17.64■□□□□ 0.41
SYNE3-202ENST00000553340 FNDC1Q4ZHG4 1894 aaPredicted RBP17.63■□□□□ 0.41
SYNE3-202ENST00000553340 CROCCQ5TZA2 2017 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 AQP12BA6NM10 295 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 BBIP1A8MTZ0 92 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 GPR32O75388 356 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 GNAO1P09471 354 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 IL10P22301 178 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 CDC42EP1Q00587 391 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 INPP5AQ14642 412 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 C16orf72Q14CZ0 275 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 PM20D1Q6GTS8 502 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 DLK2Q6UY11 383 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 ARHGAP36Q6ZRI8 547 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 AQP12AQ8IXF9 295 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 ATPAF2Q8N5M1 289 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 EDEM1Q92611 657 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 PLEKHG4BQ96PX9 1271 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 TRMOQ9BU70 441 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 FSD1LQ9BXM9 530 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 HIPK3Q9H422 1215 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 ATP6AP2A0A1C7CYW4 349 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 DHRS12A0PJE2 317 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 AURKAO14965 403 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms