RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LSM8O95777 96 aaKnown RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 OCM2P0CE71 109 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 OCMP0CE72 109 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZSCAN5DPP0CG00 497 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 RBP3P10745 1247 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF12P17014 697 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 NPR3P17342 541 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PSMC3P17980 439 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 CD72P21854 359 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 YWHAQP27348 245 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 SSTR1P30872 391 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 GDI1P31150 447 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PPARGP37231 505 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 HSPA13P48723 471 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 COPAP53621 1224 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TMPRSS15P98073 1019 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 CREB5Q02930 508 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ACAP1Q15027 740 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TGFBIQ15582 683 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 HIF1AQ16665 826 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 KCTD21Q4G0X4 260 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ARHGAP15Q53QZ3 475 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 RALGPS1Q5JS13 557 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF362Q5T0B9 420 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 RNASEH2BQ5TBB1 312 aaKnown RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PGM2L1Q6PCE3 622 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PAOXQ6QHF9 649 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PHF13Q86YI8 300 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 CRLF3Q8IUI8 442 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 MFSD6LQ8IWD5 586 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 GLIS1Q8NBF1 620 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TRPC4APQ8TEL6 797 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 DCAKDQ8WVC6 231 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 MRPS31Q92665 395 aaKnown RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TRMT61BQ9BVS5 477 aaKnown RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 DUSP16Q9BY84 665 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 LHX5Q9H2C1 402 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 SLC2A4RGQ9NR83 387 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 IL37Q9NZH6 218 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 CROTQ9UKG9 612 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 TSPAN16Q9UKR8 245 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 FBXL21Q9UKT6 434 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PCDHGB4Q9UN71 923 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 POMPQ9Y244 141 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 PCDHGB5Q9Y5G0 923 aa7.74□□□□□ -1.17
LIMA1-216ENST00000552909 NUP210Q8TEM1 1887 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-216ENST00000552909 MYOCOSA0A1B0GUC4 107 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 FAM92AA1XBS5 289 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CCDC162PA2VCL2 907 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SHISA7A6NL88 538 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 M0QYV0 167 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ARNTLO00327 626 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PI15O43692 258 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 LIASO43766 372 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BANF1O75531 89 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 KITP10721 976 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF23P17027 643 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 HDCP19113 662 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 MMP8P22894 467 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 AVPR1AP37288 418 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BCAP31P51572 246 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TNK2Q07912 1038 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BST1Q10588 318 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 OASLQ15646 514 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CLPPQ16740 277 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ARHGAP17Q68EM7 881 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SLC2A7Q6PXP3 512 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 LCLAT1Q6UWP7 414 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 MON1BQ7L1V2 547 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 AMIGO2Q86SJ2 522 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 KBTBD6Q86V97 674 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CCDC33Q8N5R6 958 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TRIML2Q8N7C3 387 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ACTRT2Q8TDY3 377 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 FBXO32Q969P5 355 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 E2F7Q96AV8 911 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TRIM11Q96F44 468 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 VCPIP1Q96JH7 1222 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 LRGUKQ96M69 825 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CEP295NLQ96MC4 621 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 KLC2Q9H0B6 622 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BRD9Q9H8M2 597 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 LIN28AQ9H9Z2 209 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 HEBP1Q9NRV9 189 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TDP1Q9NUW8 608 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 OSER1Q9NX31 292 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TRPM5Q9NZQ8 1165 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GMIPQ9P107 970 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 WNT16Q9UBV4 365 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CYTH4Q9UIA0 394 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PSMD13Q9UNM6 376 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 DOLKQ9UPQ8 538 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 HEMK1Q9Y5R4 338 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 IKBKGQ9Y6K9 419 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TICRRQ7Z2Z1 1910 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CACNA1IQ9P0X4 2223 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 OTOL1A6NHN0 477 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SDR42E2A6NKP2 422 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GOLGA8SH3BPF8 625 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GOLGA8MH3BSY2 632 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms